CI01000004_03361436_03375825 (SCINLB)


Basic Information

Item Value
gene id CI01000004_03361436_03375825
gene name SCINLB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3360918 ~ 3376605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03361436_03375825.mRNA
ATATAAAAAGCATATCACCTTATTAAATGTTTAAATTAGTTTCTGAGGAATATGTTGACTCTTTAGTCAGTTCAGTTCAGGCAGCGCCTATGTCAAGTTTATCACCTTGATCATGTGTTGCTCTTCAGCTTCAGCTTATCAGCTGTTTGTGGTAGTCAACAACACTATAATGACTAAGGTGCTCTTTTAAAAGGCTTATCTATCCTGTCACACAGACGCACACACAGAGGTGTGATGTATGGTGCATTGCATTTGAATCTGAATTTTTGCATGTAAGTAAATAGTGTAGACACATAGTCGCCATACTTTGCTAGACTGCATATTTTATGGGGGACTGTGATTCCAGAATCAGTTCTGAGGCACTAGCTTTCTCAGAGGAACGGATACTTCTTATTTCTCTAAAGCCTATTTTTGTTCTCCTTTGCCTACACGCTTGATGTTTCTCATTTTTACTAGTATGATGTAATGCTCTGAATAGACATCCAAACCTTTTATCTTCTGCTTCCCTTCCAGTCACTATGGTGTCCCATAAGGAGTTTGAGACTGCAGGAAAGGCTCCTGGTCTGCAGGTATGGCGCATTGAGAACATGGACCTGAAGCCAGTGCCTAAGAACCTCTATGGCAACTTCTATACGGGTGACGCCTACCTCCTGCTGTACACCACCACCGCACCCTCGTACTATATACACATGTGGATGGGTAGTGAGTGTTCTCAAGATGAAAGTGGAGCCGCGGCTATCTTCGCCACACAGCTGGATGACTTTCTCGGAGGCGGTCCCGTTCAGTTCCGTGAGGTCCAAAACAACGAGTCACTCACCTTCCTGGGCTACTTCAAGTCTGGCATCAAGTATAAGCAAGGTGGGGTTGCATCCGGCTTCCATCACGTGGTGACCAATAATGTGGATGTGAAGCGTCTGCTGCACATCAAGGGCAGGAGGGCCATCAGAGCCACTGAGGTGGAGATGTCCTGGAGCAGCTTCAACAAAGGAGACTGCTTTATTGTAGACCTGGGGAAGGATATTTATCAGTGGTGTGGCAGCGAATGCAATCGTTTTGAGCGTCTGAAGGCCTCCCAGTTGGCCATCGATATCCGGGACAATGAGAGGAACGGCAGGGCCAAGCTGATCATGGTGGAGGATGGGGCTGAACCAGAGGTTCTGACTCAAGTTCTTGGGCCCAAATCCAGCATCAGCCCTGCAATTCCAGACGACGAGGAAGTGGAAAAGTCCAACAAGAAGAAGGGAGCATTGTACATGATCTCAGATGCCTCTGGCTCCATGAAAACATCTGTCGTGGCCCAGACCAGCCCGTTCAAGCAGGAGATGCTCTCCCCCGAAGAGTGTTACATCCTGGACAATGGAGTTGACAAGAATGTGTTTGTATGGAAAGGACCGAATGCAAACACATCTGAACGCAAAGCAGCTATGAAAGCAGCAGAGCAGTTCATTAAAGAGAAGAACTACTCTAGTAAAACACAGATCCAGGTGCTGCCTGCAGGGGGCGAGACCACCCTGTTCAAGCAGTTCTTCTCTAACTGGAAGGACAAGGACCAAACCACTGGCCCTACCAAGGCCTACACCATAGGCAAAATAGCCCATGTGGAGCAGATTCCTTTCGATGCCTCTAGCCTCCACAACAACAAGGCCATGGCAGCCCAGCACAACATGGTCGATGATGGTTCTGGAAAAGTCCAGATCTGGCGTGTGGAGGGAGGAGACCGTGTCCCGGTGGATCCCTCTACCTACGGTCAGTTCTTTGGGGGAGACTGTTACCTGATCCTCTACAGTTACAAACAGGGAAGCAGGGAGCAGCATCTCATCTACACCTGGCAGGGCCTGAAGTGCACTCAGGACGAGCTGGCAGCTTCTGCCTTCCTTACTGTCCAGCTGGACGATTCCATGGGAGGAGCTCCAGTTCAGGTGCGAGTGACACAGGGTCAGGAACCCCCCCACCTGATGAGTCTGTTCAAAGGCAAACCTATGATCATTCATAGTGGAGGCACGTCCCGCAAGGACGGCCAGACCAAGGCAGGCAGCACGCGTCTCTTCCACATCCGACAGAGCTCTTCTAGAGCCACACGCGCTGTAGAGGTTGAACCATCTGCATCCAACTTAAACACCAATGACGTGTTTGTGCTGAAGTCGCCAGATTGTGTGTTTGTGTGGAAAGGAGCAGGTGCCAGCGAGGAAGAAATGGTCGCTGCTAAGTATGTCGTGAGTGTGCTGGATAAAAAATCCACTGATGTGGCTGAGGGTAAAGAACCAGCTGGATTCTGGTCAGCTTTGGGCGGGAAGAAGGAATACCAAACCTCTTCAACTCTAAGAAATATGGTCAAACCACCACGTCTGTTCGGCTGCTCCAATAAGACGGGCCGGCTAGTGGTTGAGGAAGTACCTGGAGACTTTACTCAGGCAGACTTGGCTACTGATGATGTGATGTTGCTTGACACCTGGGATCAGATCTTTCTTTGGATTGGTAATGAAGCCAATGAGGTCGAAAAAACTGAGTCACCAAAAATAGCTAAGGATTATGTGGACTCAGATCCTTCTGGACGTCGTGGGCTGCCTATCACAACCATAAAGCAGGGGGCCGAGCCCCCAACCTTCACGGGCTGGTTCCAGGCCTGGGACTCTAAAATGTGGGACACTGACCCTCTGGAGAGAATCCGAGCTTCCTTTTAAACCCAGAACTGTTCTCTCTTCTTTTCTTTATACAAACACTTCCTGTTCCTGTGCCATAAATTGCAACTTTTTCAGATTTTACACAATTTAAAGATTGTTGAAATGCCCATCTCACTTAAAGGTGCACAAAGTAATTTTCTTTTTGGTTTACATTGTGTTGGCCAGTAGGGCAGTGGCCTTGGACTGCAATTAGTTTTTAGTTACTGATGCCATTGTAAAAACTTTGATCACAGTCAGCGATGATTCATTTATTCAGTGAGCAAAACAGTCCAGTAATAGGTGAGGTTTTGAGATAAAGTGAGTCTGTCCTCATGAGGCAACCCATTCCATGTAAAACAAAAACAGCTTATTTAGTACTACTGATCATTTTAACCATAACCAAAAGTACTGTAAAAAGTATTTAAAAAAAAAAAAAAAGTTTATAATGAGGTAAAATTACCTATTGCACCTTTAAGGCTGACAGATTCCATAGTTTTATTGAACCTAGTCTATTAAAATAGTTTTTGTGGATGCTAATAGACTAGGTTCTGTGTTCAACCAGAATCAGCTATCACAGTAGAAGGGAACCTGCCAAAACGATTAGCACTCATAATAGTTGGGTTAGAGTTACACTATTTTACCCTTGTTATTTAGTCTTTTGACTATTTATTTCTGGTTGGCACTGCCAATATGATCTCCTAACGTGTCAACGAGTATTAAAAATGTGTGGAAAAATTCTTTGACTTTTTTTTTACACCCAAGCCATTGATATATTTTCAGCTTGTTCTTTGTTAAACTTTA

Function

symbol description
scinlb Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within actin nucleation and cell projection organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in several structures, including central nervous system; cornea; digestive system; hatching gland; and swim bladder. Orthologous to human SCIN (scinderin).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05768 GSN; gelsolin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03361436_03375825.mRNA True 3461 mRNA 0.46 16 3360918 3376605

Neighbor

gene id symbol gene type direction distance location
CI01000004_03324524_03348961 CCDC18 coding upstream 11805 3324524 ~ 3349113 (+)
CI01000004_03311105_03322167 MTF2 coding upstream 38116 3311105 ~ 3322802 (+)
CI01000004_03275086_03275655 RPL5 coding upstream 85216 3275086 ~ 3275702 (+)
CI01000004_03267663_03271388 NA coding upstream 89356 3266719 ~ 3271562 (+)
CI01000004_03223283_03238063 RPAP2 coding upstream 122837 3222913 ~ 3238081 (+)
CI01000004_03378562_03405135 WLS coding downstream 1957 3378562 ~ 3406001 (+)
CI01000004_03415537_03416073 NA coding downstream 38437 3415042 ~ 3416198 (+)
CI01000004_03426800_03430289 GBG12, GNG12, GNG12.L, GNG12A coding downstream 48857 3425462 ~ 3431535 (+)
CI01000004_03432787_03433110 NA coding downstream 56182 3432787 ~ 3433454 (+)
CI01000004_03496175_03497985 DMBX1, DMBX1A coding downstream 118141 3494746 ~ 3498384 (+)
G26199 NA non-coding upstream 50887 3309796 ~ 3310031 (+)
G26187 NA non-coding upstream 72938 3287606 ~ 3287980 (+)
G26186 NA non-coding upstream 74756 3285826 ~ 3286162 (+)
G26185 NA non-coding upstream 77754 3282904 ~ 3283164 (+)
G26184 NA non-coding upstream 80824 3279893 ~ 3280094 (+)
G26317 NA non-coding downstream 205939 3582544 ~ 3582765 (+)
G26276 NA non-coding downstream 209180 3585785 ~ 3586457 (+)
G26233 NA non-coding downstream 210230 3586835 ~ 3589187 (+)
G26349 NA non-coding downstream 279208 3655813 ~ 3656027 (+)
CI01000004_02745885_02768971 NA other upstream 601980 2745885 ~ 2769135 (+)
G25992 NA other upstream 624150 2736536 ~ 2736768 (+)
G25882 NA other upstream 787869 2548075 ~ 2573049 (+)
G25329 NA other upstream 1275211 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1487560 1867166 ~ 1868986 (+)
G26245 NA other downstream 132412 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 174443 3550329 ~ 3553423 (+)
G27805 NA other downstream 1996220 5372825 ~ 5373803 (+)
G28165 NA other downstream 2355984 5732589 ~ 5733001 (+)
G28302 NA other downstream 3093423 6470028 ~ 6502087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location