LOC122342370


Basic Information

Item Value
gene id LOC122342370
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27207736 ~ 27210602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236149.1
ATGGACacagattcagctgatcttcagtGTGGTCCTTCTGATCTCGAACCAGCAGCACACTGTCATCCAGCTGATCCACAGCCAGGCCCGTCCGGTCTAGAGCCAATAACTCTACAGGATCAACCTGATCCTCTGCCATGTCTGTCCAGCATCACACCGATagactgtgatgaaaatccagctgatCCCGAGCCAGCTGAAGctgatccTCAGTCGGATCCAAACATTCTTGAACCGATGGCTCTGCAGCATTCAGCTGATCATCGGTTAGATCCTTCTGTCCATGAAACCAGGGCTCGACAAGATCtgactgatcctccagaagatcaTCTGTCTTGTTCGTCTGATTCTGGTCAAGAACCGCTTGGTTTTGTGCCATCGTGTCTGCAGAattcagctgatcatcaatCGGATCCATCTGTCCTTGAAACCATGGCTCTACAAGATCtgactgatcctccagaagatcaTCTGCCTGGTTCGTctgatcctggtcaagaaccACCTGGTTTTGAACCAACATGTCTGCAGAATTCAGCAGATCATCAGTCGGATCCATCTGTCCATGAAACCATGGCTCTACAAGATCtgactgatcctccagaagatcaTTTGTCTGGCTTGTCGGATCCTGGTTTTGTACCAACATGTCTGcaggattcagctgatcttcttcCAGGCCCGTCAGCTCTTGAGCCAGTACCCCCAAAATTTCCAGCTGCTTGCAAGCATAGACGAATCAAGGATCAAACCCGAGCAGCCTGTTTTGGCCGTCCAACTCCAGaaccatttgatgagatttatgaagTGGGAGATGAGCTTGGACAAGGAGGCTTTGGCACTGTGTACGAGGGGACTTCAAAAAATCAACGCAAGAAGgttgccatcaaaatcATTCTCAAGTGTGAAAGAGACCGTTATATTGAACTAcctggctgttcaaagccactgtttgcagaagtggctgcAAATCTGCTGCTGAAACAGGCACCATTAAGCCCCTACATTGTGTACATGCTGGAATggtttgaagaggaggatcggttcatcctcatcctggaaCATCCGGAACCCTGCAAGGACTTGCTCAAATTTGTGGTTAACAACATGAATTGGGCGAACGAATTACAGACACGTAGCCTGATGTATCAAGCGGTGCTCGGGGCCAAGCACTGTCTTGACAGAGGTGTCTTTCACCGGGACATTAAGTTGAATAACTTTCTGATCAACACGACGACTAACCGAGTCcaactaatagactttggctgcagTGACCCCGTCAAAAGTACAGGCTACTTGGGTGATTTTATAGGAGGAGTCTGCCCGCCTGAATACTACAAGGACTTAAGATACAAGGCAGAGCCAACAACCGTCTGGTCTCTGGGTGTAATGATGTACACAATGATGTGCAAATGTCGACCCTTTAGCagtcctgaagacatgatgcatggcagtctgagttttaacgttagagtatccacagaattgcagaacttgataagtcgctgcctgactgttgacccaactaagagagcgactattgaggagatcctacagcataaatggttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236149.1 True 1569 mRNA 0.48 7 27207736 27210602

Neighbor

gene id symbol gene type direction distance location
trnav-aac_9 NA coding upstream 66112 27141552 ~ 27141624 (+)
trnav-cac_2 NA coding upstream 68610 27139054 ~ 27139126 (+)
trnav-aac_8 NA coding upstream 69828 27137836 ~ 27137908 (+)
trnav-aac_7 NA coding upstream 70710 27136954 ~ 27137026 (+)
trnav-aac_6 NA coding upstream 71788 27135876 ~ 27135948 (+)
trnav-uac_5 NA coding downstream 13312 27223914 ~ 27223986 (+)
LOC122342913 LOC107752534,LOC107665115,LOC107549827 coding downstream 208941 27419543 ~ 27436028 (+)
tcf19l LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348 coding downstream 225831 27436433 ~ 27442200 (+)
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding downstream 249879 27460481 ~ 27599258 (+)
atp1a3a atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181 coding downstream 412070 27622672 ~ 27649545 (+)
G31429 NA non-coding upstream 9470 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 123029 27084317 ~ 27084707 (+)
trnay-gua_43 NA non-coding upstream 206881 27000769 ~ 27000855 (+)
trnar-acg_39 NA non-coding upstream 207445 27000219 ~ 27000291 (+)
trnay-gua_42 NA non-coding upstream 209864 26997786 ~ 26997872 (+)
G31438 NA non-coding downstream 22494 27233096 ~ 27233432 (+)
G31443 NA non-coding downstream 152986 27363588 ~ 27410595 (+)
LOC122343300 NA non-coding downstream 397185 27607787 ~ 27619661 (+)
G31520 NA non-coding downstream 501644 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 587371 27797973 ~ 27798209 (+)
G31384 NA other upstream 1394111 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1512355 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 1519506 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 2440184 24743848 ~ 24767552 (+)
G30882 NA other upstream 2479289 24721424 ~ 24728447 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 86934 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 146210 27356812 ~ 27358163 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other downstream 150241 27360843 ~ 27406088 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 996356 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 1008131 28218733 ~ 28221417 (+)

Expression


Co-expression Network