col9a3 (col9a3,LOC107713563,LOC107598802,LOC107680173,LOC107719903,LOC107677638,LOC106571930)


Basic Information

Item Value
gene id col9a3
gene name col9a3,LOC107713563,LOC107598802,LOC107680173,LOC107719903,LOC107677638,LOC106571930
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25711662 ~ 25728651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236264.1
tgtcgtCGGATGGGtggcatctctctctctctctctcgagctCTGACCGCCCCCTCGCTCCGCCGGACTCCTGCTCTTTATCTACATTCATACTGAGGGTCTCCAGCACAGGACGCGGGAGCCATGGCCGTCTCCTCAGCGCTTCATGTACTCGTCCTCTGTCAGCTGCTAGCGTCCTCTCTCGCTCAGGAAAGGCCGGGCCCTCGGGGTGCACCTGGAGTGCCGGGACCACCGGGACCCCCGGGGAAAGACGGCATAGACGGCAAACCTGGCCCTGCTGGACTTCCCGGGAGACCTGGGCCGAAAGGTAAAGCGGGTAAACCTGGGGCCGCAGGGAGCTCGGGACTGCCTGGCCTCCCCGGGGTGGATGGTTTGACTGGTCCGGATGGTCCAGCTGGCAAGGACGGGCCCCCAGGAGCAGCGGGTGACTCCGGACCTCCCGGACCGGGCGGACCCCCTGGCAGAGGCAGACCAGGAGCTCTGGGCCTCGCTGGAGCTAATGGACTTCCAGGTGGACCGGGACCTAAGGGTCCGCTGGGGCCCGAGGGTCTTCCTGGACTCCCAGGTCTTCCCGGCCCAGACGGACCTCCTGGACTCCCAGGAACTCTTCCTGAAGGCAATGGAGATCTGCTGTGTCCGGCCATCTGTCCCCCGGGTCCTCCTGGACCGCCGGGAATGCCTGGATTCAAGGGTCACACAGGTCATAAAGGCAGTAAGGGAGAGCTGGGGAAGGATGGAGAGAAGGGGGATCAGGGGCCACCGGGGCCACCGGGAATCCCAGGGACAGTGGGCTTGCAGGGCTCTCGAGGGCTGAGGGGCCTGCAGGGGCCGGTGGGAGCCGTAGGAGACCGAGGATTGCCGGGCTTCAGAGGAAAACCTGGAATCGCTGGCATCATTGGAAAAACTGGTGATGCTGGTGAGAGAGGACCAGAAGGTTTCAAAGGGCCCAAAGGAGAGATAGGAAAAATAGGCCCCAAGGGACTACCTGGAGGAGCAGGACCTAAAGGAGAACCGGGCATCCCGGGCAGGGACGGGAAGGATGGCACTCAGGGGCTGGATGGAGAAAAGGGAGATGCTGGGAGACTCGGAGTATCTGGCGAGAAAGGACCTAACGGCCTGCCTGGTTTGCCAGGAAAAGCTGGTGCCAAAGGGGCCAAAGGAGGAGTTGGCAGTCCAGGAGAGATGGGAGAAGCAGGACCATCTGGAGAGCCAGGTATACCTGGCGAGATCGGCGTCcctggagagagaggagaggctGGAACCAGAGGAGTAGCTGGCGGCATTGGACTAGCTGGAAACTCTGGACCACAAGGTGTTAAAGGATTCCAGGGTGTTAAAGGGGCTATAGGTGACCCAGGTCTGCCTGGTCCGACGGGAATCAGAGGCGGCTTCGGTGAGCGGggtcCAGTTGGAGCTGGAGGGCCTAAAGGAGACATGGGAGTTGCTGGAAGTGATGGTTTACCGGGGGAGAATGGAGAGCCGGGTCCTTATGGTCCCGTCGGTCAGAAAGGAGAGGCCGGAAAGCGTGGGGAGCTGGGAGCCAAAGGAGTTGTAGGACCACAGGGAGAGGGCGGAGCCAGAGGGGTTCCTGGAAAACCAGGAGCAATGGGATTCCAAGGAGAACAAGGTTTTCCAGGCGTCGCTGGAAAGACCGGTGTTCCTGGCAAACTGGCTAGTGAGCAGCACATCAGAGAACTTTGTGGCTCAATGATTGATGATCAGATGGCCCAGCTCGCTGCTAACCTTAGAAGACCCCTGGCTCCTGGTGCCGTGGGGCGGCCCGGACCACCCGGGTCTCCAGGGAAGCAAGGAGAAGTTGGATCCATCGGCCACCCTGGAGCCCTCGGTCCACCAGGTTATAGAGGACTGCCCGGGGATCTCGGTGACCCTGGTCCTCGAGGGGATGTCGGCGAGCCAGGTGACAAGGGGCCTGTAGGTAAAGCCATCGAGGGGCCTGCTGGAGACCAAGGGGACCCAGGTCTGCCCGGTGTGCATGGCATCGTCAAAGATGGCCGTGACGGAGCGCCTGGAGACCCAGGAGAACCAGGAGAAGCAGGGAGAGCCGGCAGGCCAGGTCACCAGGGGTCACCCGGAATCTGCGACACATCAGCATGCCAAGGAGCTGCAGTTCACGGGAAGTCCTCTAACCCCAAGAACCATTAACAGCAGAACCAACAGCTTCTGGAGGAGAAACACAACTGAAGTGTCAGAGCAGCATGTTCAGAGCCGAATGAACACTGAGCATCAGAGCGGAGCCTCTGTGTAGATACAGCAAAAGACTAAACGCATCACACCGAGAAAAAAGCTGATGTGAAAATAATCCTTCAGTCCTTGTATTAGAAGTCTTCTTGTACAGCCCCCTTTAAAAGTGTAAGAGTACTGCCTCATGAGGGCTTTACAGCACCTCAAAAACTGATGTCCGCaagagcaaaaacaaagaaatgaaacCAAAATATTGGACACATTACTGCAGATTGATTTtctttgccattttattttttatgtttacattttgaatcTTAAACATTAAGAACTAAGTCACTGTTTGAGGAACAAACTTCACGCATCAACAGAGATGCTTCAGACACACTTACTGTAAAATATGTCGTTGTCCATCTGTGGGCTTCATCAACCTTATCCACTAGATAATGGTGctgtaaaactattaaatatgattttaaatactatttattatttctgagtTACTGTTGTGTGTATAGTGAGTTTCTACAGCATGGTATTGTAAGAAAAACTGAATAAAGCCACTTTTCagtgaagtatttttttttgaacatttgttagtacaataataataaatacattaaatagaaaataatgtaCAAGCAaggcataaaaacaaacattcagaaAGGTGTGCAGTTTTGTGTGTGAACTATATCACAGTAAGGATGTGACCGTTTCTGGTCTGGAgagtctgaaataaaaagagcaGCTGGAGTGTAGAAAAAGACTCAAAGACAACAGGCGCTCAGGTCTCCTGGACACAGGTTAGTGAAAGAGAGGCGTAGCAT

Function

symbol description
col9a3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization and skeletal system development. Predicted to be active in cytoplasm; extracellular matrix; and extracellular space. Is expressed in several structures, including head mesenchyme; hypochord; mesoderm; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 3 and osteochondrodysplasia. Orthologous to human COL9A3 (collagen type IX alpha 3 chain).

NR:

description
collagen alpha-3(IX) chain-like

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236264.1 True 3032 mRNA 0.55 32 25711662 25728651

Neighbor

gene id symbol gene type direction distance location
ogfr ogfr,LOC107706812,LOC107690085,LOC107713566,LOC107677637,LOC107598801 coding upstream 2025 25703831 ~ 25709637 (+)
lsm14b lsm14b,LOC107748998,LOC107569639 coding upstream 76854 25631361 ~ 25634808 (+)
l1camb LOC107661992,LOC107746188,LOC107598812,LOC107568828 coding upstream 101817 25573077 ~ 25609845 (+)
zmp:0000000926 LOC107754864,LOC107661991,LOC107568831,LOC104958731 coding upstream 157829 25517396 ~ 25553833 (+)
LOC122342420 LOC107667978,LOC107563545 coding upstream 929321 24770632 ~ 24782341 (+)
trnas-uga NA coding downstream 96460 25825111 ~ 25825192 (+)
trnak-uuu_1 NA coding downstream 97973 25826624 ~ 25826696 (+)
trnas-uga_1 NA coding downstream 98510 25827161 ~ 25827242 (+)
trnak-uuu_2 NA coding downstream 98701 25827352 ~ 25827424 (+)
trnas-aga_2 NA coding downstream 99505 25828156 ~ 25828236 (+)
G31228 NA non-coding upstream 396109 25315179 ~ 25315553 (+)
G31226 NA non-coding upstream 397066 25314223 ~ 25314596 (+)
G31223 NA non-coding upstream 722388 24988867 ~ 24989274 (+)
G30877 NA non-coding upstream 996664 24714697 ~ 24714998 (+)
G30812 NA non-coding upstream 1224775 24456022 ~ 24486887 (+)
G31380 NA non-coding downstream 58729 25787380 ~ 25787901 (+)
G31388 NA non-coding downstream 88380 25817031 ~ 25817564 (+)
LOC122342592 NA non-coding downstream 187738 25916389 ~ 25917199 (+)
trnas-aga_27 NA non-coding downstream 204530 25933181 ~ 25933262 (+)
trnas-uga_25 NA non-coding downstream 207507 25936158 ~ 25936240 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 16281 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 23432 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 944110 24743848 ~ 24767552 (+)
G30882 NA other upstream 983215 24721424 ~ 24728447 (+)
LOC122343086 NA other upstream 1037250 24672891 ~ 24674412 (+)
G31384 NA other downstream 83980 25812631 ~ 25813625 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 1568885 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 1628161 27356812 ~ 27358163 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other downstream 1632192 27360843 ~ 27406088 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 2478307 28206958 ~ 28216248 (+)

Expression


Co-expression Network