LOC122342913 (LOC107752534,LOC107665115,LOC107549827)


Basic Information

Item Value
gene id LOC122342913
gene name LOC107752534,LOC107665115,LOC107549827
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27419543 ~ 27436028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237110.1
CCGAGCGAGGCCGATCTCAAATTGTCTTCAAAACGAAATCAGCCGAAGTCTCCCAGATAACGCCGATTTGTAAAACAGAAGTGTCTTTCTTTGGCAGATTGGGGGCGATGAAGAAGGGCTGGATAGCAGGAGGAAGAGCAGAAACCTCCTTTTAAACCGCATTCCTCTGTTTCCCGTGCCAATCCCTGCGCTGCTTCGGATCCCACATGCAGAGACATCCAGCTAAAATGAGGCTCACGCGTGTGGCAGTCATCAGCACCCTCCTGTGCTCAGtttggtCATCAACCATTAAAGCTAAAGACGAACACCGCACTGCATTCTTTGGGGAAGACGTTCATATTCCGGTGCCGGCTTTAGACACAACAGAGGTGTTGTTCAAGCCGAGGGTGGATCCGGTAGAAGAGCGGGCTTTCCTGCGAGGCGGGAAAATTCTGGACTCAAGGGCCAAACTGAACGTTCACATCAGTCATTTGATCCTGGAGGATGTGGGCGAGGAGGATGAGGGCACGTACTTGGTGAAGAACTCTGCGGCCCCGGCTGATGTCAGAAGAATCATTCTTATCGTTAGAGACTGTGCTCTAGAGACTGTGGTGAAATACGGAGACACGTATCATATCCCGATCAACCCTTCGATTGGTCCGTACACCCTTGAGTTCAGGCCTGGAGTCCACCCGACCACAGAGGTGCCGCCCGTGCTGCTTCTCAACCAGACCGGCGTCCCCTCGCTGGAGTACGAGCGCCGCCTGAGCGTGGGAGAGAAGAGGGTCAACCTCCACTTGGTTACAGGAGCCGACGAGGGCAGCTACACGGTCATAGACAGTGATGAAAAAGTCCGATTGAGAGCCTGTCTCAATGTGAAAGACCACCAGATCTTTGACCACCTGAACTACGGTGAAACCCTGAAGATCAAGCTCCACGTGGACCACACCAAGGTCAAAATGGTCTACATCCCAGACACTGACCACAAGGAGCGACTCATCATGGACCAGGGGGAGCTGACGATACCCGACTCTGCTTTTGAGGGCCGGGCGTCCGTGGAGGGGTCCGTGTTCTTCCTGAAGAAGGTCAAAGTCGCCGACATGGGTGTCTTTCGAGTCATGGACTTTTCCGGCTTCCGCATAGCCGACGTCTACCTTCACGTGGAGCCCTATAAGCTGCCGCAGCTGTACGTGGCCATCATCTCCTTGCTGTCTCTGCTGGCGTTCCTGCTGTTGGTGTGTCTGCTGTCCTGCCTGATCAAGGTTCACCGGCGTGCCGAGCGAGCTCGTAAGATCACTCTAATCGCTCAACAGGCCGGCAAAGGCGACGGAGAGGCCTTCAGACAGGTGGTTCAAGATGCTTATACTAGATTCACGGAGGAGTCCACCGTACAGTCCACATGGGAGAACGCCACCGAGAGCACAGAAGTTGAGATCAAAGGTCTAGAGGTATCAAAACCGGGTCAGTACCAGGCTCTCCAGTCCGAGAAGAACCTCCTGGAGATGAACGACTCAGGCGTGGAGTTCAACTCGTCCGCGCTCCCCCTGGACAGCGACACAGACGTCCCCGACAATCTGACCTCTCAGAAGCTCCTGCTGGAGTCCGACACCCTCGCCGGTGACCCGCCGGCCGTGTCCGAGGGCGAGCACAGCGCCACCCGCACCCCCGACTCCATCCTGAGCGCCAGCCCCGTCGTCCAGCCCAAACCCGCTCAGGTAGACGCCGCTCCGCCTGAGGAAACCACCAAAGCCAACGACGGAGATGCTTCGCCGCGCTCCGAAAAAGCACTGGATCCCACGACCTGAGCACTTTAAAGCCGACCGAGCCGCGCTGCAACCAGCGTGGCCACCCTTCCTTCACCACATCTCACCGTCTGACGTGACACTTCATCTTGCTTGGATCGATCTGCTGCATAACGAATGGTTCGTCGATCGGAGATTCTAGAAGAACGATAGAACAAATCCAaaagaagacagaaaaaaaataaatatataaaaattgaagAGCCGAATCGGTCCTGCACTATGCATGCCTTTGAGGACTAGTTTGATACCAAGTGCTAGATTAGAGTGACCATGTAGTGCATGTGAGAAGTAAGACTTCATACTTTTTTAATCTTACAAAACAATGCGACTGTAACTTAAGACTTTTACGAGAACTGCCTGAGACTCCGAGGAAGCTTGGAGCGACGCCCGAAGCGGACCGCGCTGGATCCTACATCTGCCAAAACGCCAAATTGTGAGAATTTCTTCATTGGTGGAATCGAAGCAGGATTCACCTCCGAGATCAAACGCGCTTCACCTGCTGCGAATGCTTCCTTTCAGTCACCGCCGGCTTTGAAGTGCTTTGCTGATAATCCTCGCCAATGGTAAACCAAACACCTTGATGAATCAGGTCTGCGTGGATGACAGGTATCCGATGCGGCGGCTTAGAGCCGTAAATAGGATCAGCGGCGGTGGAGGGTTTTGGCCCTGGTTCAGAGGAACTCCTCTGAAGGATCAGCTTGTCTCAGCAGTTCTAGCTGCTGATTCTGCTGGGGTGTCTCCACAACCCGGGCCTTTCCGGCGATCTCCTTTTCTAGCGCTTCTCGCGCCGTCCTTTATTCCtaatcatttgaatatattttagctCGGAGAAACGCGCCCGTTGAGAAAATGATTTGCGACGAGATTCAGCTAAGCGGAGGTCTAGGGGGTGCTGAGTTCAGGATAATTCAGTATTCGTAATATCTAATGGGCTTTCGTTACGTAGATTTGAATCGTTTGTGTTTGACTCACTGCTGTCGGTACGCTTGAGTCGGCATGAATCATCCATATTTCCAGCTGCAACATTGTGCTTCTGCAGTTTTGCaagatttttaagatttaatcaTTTCTAATATCTTTCTCGTACCctaaaactcttaaaaataaagttttttttttactagcatTGATGTTCAGTGAGGAATCATTAACATTCACTGAACCTTTCAAGTGCAAAGAAAAGattcttttctttattatgaatattatgtttattacactaagaaaaaaaaaactttgtggcaaaaatcagctttatttttaagagtgtataaTTGTAATTCTCTTTTAGTGTTCTCATAGCACTTAATTTTTAGGTTAATGCTACATGTTTCTATTGGATAGATGCGTTTCTGCAGGTAAATCATTTGTGAGGAGGATTCTgatgcaatattaaaatgagCTGTAGCTGGTGGGTGGAGTCTTACAGCAAAGGGGCGTGGTTTGGCCTGTTTGTGAAATTGCTACCTCATGTTTTGGTGTCTGAAGGACGCATGGAAGGGAAAATGGCAAAAGACACAGGGtgtcaaaaaaagcacaattaagACAAAATCCTTGCAAAAAGATGTGAATTAAATTGCAGCTAATGTAAATACAGTGGTTTGCAGAAAATAGTAGGCAAAGTAGTTGAATTGCGAATTAATCGAACCCCTTTTTGCTTATAGTGAACCCTTTAGTGACTGCATTCAGAACACGGATAGAttgattgtaatttttttatgcatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtttttctataTTGCATTGAAATCTATTGACCCTAGATTTTTGAGCAgcttgcattattttaaactcCCATTTCTTCACTCCAGAAACTGTTTTATTGATTAAGGTTTGTTATGTCACATGACTAAACGTGCCATTATTGGGCCTTATGAAGCAATATTAGTGTGAAAGCATTGGGCCTTGCTTATGAAGCATAagccaaaatattttctttgtgtattgTTCATAAACCtttcactctcagaaaaaaaagttgctaaaTCTGTCTTTAAGGTATCGGTATTCACCTTTTAGGTTGCAAACGCGTACCTTTCGAAAAGATACTGCCCCCGTGACAGCTTTTTCTTCCTGAGAGCATTCTTACATTCAAAGTTCGTAATCAATTCGCTGCAGCATTTTATGTATGAATAGTCTTATGATTGATTTGCGCCACTCATGTTTGATGAATGAGGCTGGAtgcactcacgcacacacacacacacacacacacacacacacacacacacacacacagggtaggtgcaacaaacaaacacaaacttctGTACATAGATGTATTGCATGTTAATGATCAATACTATCCAATGATTGCTCTATTCTTATGAATTATTCTTCAGATAACAGACACAGCTtctaaagaaatgaatgacataAAAAACAAGAAACCTTCGCAGGGTTTCTGCAGGTCATAAATTGGCTTTTTATTCGCTCTTCCACAAATTAAGACCTTAAAAATCTGAGCTGAAATCTTAAATTCAGAAATTGGTGGCATTTACGGCGAAAAAAACAACTTCTTCCTCAgtgtttttgtcttaaatatataaaccttttttgATCGAGGTACATTCACTTgagattggaaaaaaaaagcatatatcaAGGCTTGTTTTTTAAGGGATTGAACAAAATGAAGtgagtttatgcttaaaacaagaacaaatatgcCAGTGGGGTATGAAAGCGTGTTTTTCCTTCGATTTAAGGGAGTTTTACAGACACCATTAtcacatgtgttttgttttaatcacaAACTCACTTCATTTAGATGATGATCTTTATGTCATCTGCGTCTTAAGTAGACATATCTTGATTTATGACTCCTTACAGATGtgcactggagaaaaaaaaaagactgcacGTGTGAAAGCAAGTTATTTCCAGAAGTCTAATAATCTGTATTTGCAAACTTTGAAGAACATGAGAGAGCATTCTGATGAATCCCGTCACGTTCTTTCCTTCATTATGTTCTTGGCTTGCTCTTAAAGTCTTAAATCTAGCTTCATGAAACCTGCAGAAACCCCGCTTGGGCACCGTCACGCTGTAACCTTTGCACTTGAGAATGATTTTTGATAATGCAAAACTcaagaaatatataattgcTATTTATTATACTCTCTTTATATATGCGCCGATGTCATAGATCTGCTATATACGCGACTAAAAGCATTACAGAAGCATGCTGAACTAGAGGTTGCCTGTTAGAAACGAGACTTCATTGCGTTGCATCGCTTTGTCTCTGATGAGAAGTATTCTTAatgtcagtgttattttagcagtGTTTATTCGGCTGAAAATGGATGTCACAGTGTATGATTATGCAATTTACAATCGTGAACGGAACACATCTCCAATCCTCAGGCGTCGCCGAGCACAACTAAATCAGAAGAAGAAATGGATCTCATTTTCCTGTTTCTCACAATCATGTTATATACTCATTTTTAGCTCGGTTATActtgaataaatgcattcacCCCTCAAAGCTCAGCGTGATTCACCTTTATAAAGGTCATGgcttttaaatgtgttgaaattTGCATTTGCGTTTGCATTTGAGTGCTTTGAGCCGGACATACATCACAATTCTGCACAAGAAAAGGCACTTGTCGTAGCAATACGAGCCCATCCTGCTCAGGTTCGATCAGTGGCTCACACAGATGCTGGCATCACGTAATGAATCGAGCTCAGGAGCGTGCAGGAGTTTTCAGCTGTCAGGTTTCTCGAAGTGCTTTATTCGTCTCAGAAAAGTTGTGGTAGCTTCGTAACATTGCAGTGTTCTTGCCAGGCTTCCATAAAACCGTGAATATTAACAATACTTCACAGTCATGTACAAAGCACGGTGCGCAGGATCTTGTTTTTAGCcgcttcatttatttaatattacacgTGGCTTCATAGTTTGACCTCGAGCACAGCTTTAGTTCAACTTTGATTTGCTCTCTTGAATGAAAGACGAAAATAAAACTTTGACTTCAAAAATCCAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107752534

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237110.1 True 5798 mRNA 0.44 9 27419543 27436028

Neighbor

gene id symbol gene type direction distance location
trnav-uac_5 NA coding upstream 195557 27223914 ~ 27223986 (+)
LOC122342370 NA coding upstream 208941 27207736 ~ 27210602 (+)
trnav-aac_9 NA coding upstream 277919 27141552 ~ 27141624 (+)
trnav-cac_2 NA coding upstream 280417 27139054 ~ 27139126 (+)
trnav-aac_8 NA coding upstream 281635 27137836 ~ 27137908 (+)
tcf19l LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348 coding downstream 405 27436433 ~ 27442200 (+)
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding downstream 24453 27460481 ~ 27599258 (+)
atp1a3a atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181 coding downstream 186644 27622672 ~ 27649545 (+)
LOC122342440 LOC107753802,LOC107554351,LOC107666349,LOC100537384 coding downstream 229077 27665105 ~ 27711406 (+)
erf erf,LOC107753815,LOC107666335,LOC107554353,LOC107549829,LOC107665162,LOC107752521 coding downstream 289093 27725121 ~ 27751872 (+)
G31443 NA non-coding upstream 8948 27363588 ~ 27410595 (+)
G31438 NA non-coding upstream 186111 27233096 ~ 27233432 (+)
G31429 NA non-coding upstream 221277 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 334836 27084317 ~ 27084707 (+)
trnay-gua_43 NA non-coding upstream 418688 27000769 ~ 27000855 (+)
LOC122343300 NA non-coding downstream 171759 27607787 ~ 27619661 (+)
G31520 NA non-coding downstream 276218 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 361945 27797973 ~ 27798209 (+)
G31543 NA non-coding downstream 387378 27823406 ~ 27823705 (+)
G31549 NA non-coding downstream 476289 27912317 ~ 27951998 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other upstream 13455 27360843 ~ 27406088 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other upstream 48347 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other upstream 61380 27356812 ~ 27358163 (+)
G31384 NA other upstream 1605918 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1724162 25693802 ~ 25695381 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 770930 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 782705 28218733 ~ 28221417 (+)
G31636 NA other downstream 848999 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 861274 28297302 ~ 28317582 (+)
G31649 NA other downstream 914325 28350353 ~ 28353226 (+)

Expression


Co-expression Network