LOC122343078 (LOC107730199)


Basic Information

Item Value
gene id LOC122343078
gene name LOC107730199
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18894901 ~ 18897790 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237394.1
ATACGtatcagacttttattttgacctGGCGATGTGACGTCATAAGGCCGCGCCGCGCTCCGCTGATTCGGCCGAAGAAAGCGTCCCGACACAGAAAAAGCAGCGTAACGCCCGAAAGATGTCGTTCATTAAAGAGGAGCGCGAAGACATGAAGATCGAAGAAGCATTCAGCGTGAAACGAGAAGAACCCGAGGAACAAGCGAAGATGGCACTTATTAAAGAGGAGAAGGACGACTTGAAGATCGAAGAAACGTTCGGGGTGAAACGGGAAGATGCCGAGGAACAAATAAAGATTGTGTTTATCAAAGGGGAGAAAGAAGACGTGAAGATCGAAGAAGCGTTCGGGGTCAAACGTGAAGATcctgaggaacaaacagaCCTAATGGCAgcgaaagaagagaaagaagctCTCGGTCAATCTGAAATAGCACATCAACGTGAGAATCTCCAAAAGACTCAACAGAGAACCCCTGAAGATCAAACGGGAGAGAGTTTCTCTCATGAAGCAAGTCTTGAGAGGCACGTGAAGATTCACGCCGGAGTAAAGCCTTTCATATGCCTTcggtgtggaaagagtttcaccCTAAAAGAAAACTTCAACAGGCACGTGAGATCTCACACCGAGAAGAAGCCCCACGCGTGCCAGCAGTGCGGTGTGAGGTTTGCTCAACACGGACACCTGGAAAGCCACATGAAATTTCACACCGGGGAGAGCCCTTTTACTTGCCAACATTGCGGAAAATGCTTCGCTTGTAAATCGATTCTTGAGAGTCACTTAAGAATTCACACCGAAAAGCGCTTCGTCTGCCCTCAGTGTGGAAAATCCTTCAATCAACGGGGAAACCTCAAGTCCCACATCAGAATACACACCAGAGACAGCGAGAGTGCCTTCgtctgccaacagtgtggaaagagatTCACTCACATAGGAAGCCTGAACGGCCACATGAGAACTCACACGGGAGAAAAACCCTTCACGTGCCACCAGTGTGGAGACAGCTTTGCTCACAACGGAAACCTTAAACTCCACATGAGaatccacaccggagaaaagCCTTGCAGCGTGTAATAAGTTAAAGGAGTAGTTTACGCAAAATGGAAATtgaaaaggaagatattttgaaggacGTTTGCACCCAGACCGTTTTGGGTCACTGTCGACTTCCATtgtagggaaaaaaatactatggaagtcaatagtggCCAAAACGGTCTCGTTAcagactttcttcaaaatatgttcctttgtgtttatacaaattgatacagatttggaactacttgaagTTCATtgttgagtgaactattcctttaaactttaaatCCTTAACATGCACATGGAAAGTCACACTGGAGAACGCTAGAGAGtgtagaaatgcatttctacatttaaactaaataatcaCCACACTGTCTTTTTTTGAGTGGCTGTACGATGTAATCTAAATTGTATTCATGTGTAGTCCATGgttaagtcattttattttttatatctatgCTTTGATCTGTACTGTATAAAGTCGTACAGAATAAACTTCCTTCAAGATGTTCGTAACTTCGTAAATTCCA

Function

NR:

description
PREDICTED: gastrula zinc finger protein XlCGF7.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237394.1 True 1569 mRNA 0.44 3 18894901 18897790

Neighbor

gene id symbol gene type direction distance location
LOC122343055 LOC107554755,LOC107730198,LOC107663244 coding upstream 25118 18865853 ~ 18869783 (+)
LOC122342961 NA coding upstream 62308 18823925 ~ 18832593 (+)
LOC122343011 NA coding upstream 80307 18810860 ~ 18814594 (+)
LOC122343102 LOC107747636,LOC107554732 coding upstream 84938 18805450 ~ 18809963 (+)
LOC122342235 LOC107685875,LOC107749047 coding upstream 112091 18758554 ~ 18782810 (+)
LOC122342974 NA coding downstream 11126 18908916 ~ 18915022 (+)
LOC122343048 LOC107698963 coding downstream 20810 18918600 ~ 18922510 (+)
LOC122343092 NA coding downstream 35917 18933707 ~ 18937665 (+)
LOC122343037 LOC107698808,LOC107743352 coding downstream 52937 18950727 ~ 18953599 (+)
LOC122342236 NA coding downstream 62872 18960662 ~ 18962974 (+)
G29633 NA non-coding upstream 79623 18814883 ~ 18815278 (+)
G29627 NA non-coding upstream 109655 18785045 ~ 18785246 (+)
G29600 NA non-coding upstream 229818 18662860 ~ 18665083 (+)
G29591 NA non-coding upstream 291585 18600428 ~ 18603316 (+)
LOC122343196 NA non-coding upstream 300785 18591447 ~ 18594116 (+)
LOC122343164 NA non-coding downstream 5445 18903235 ~ 18907824 (+)
G29777 NA non-coding downstream 34529 18932319 ~ 18932690 (+)
G29797 NA non-coding downstream 69597 18967387 ~ 18967714 (+)
G29803 NA non-coding downstream 147920 19045710 ~ 19053414 (+)
G29809 NA non-coding downstream 181978 19079768 ~ 19080189 (+)
G29642 NA other upstream 8499 18883179 ~ 18886402 (+)
G29545 NA other upstream 433584 18436460 ~ 18461317 (+)
G29526 NA other upstream 593712 18300415 ~ 18301189 (+)
atp5mj NA other upstream 1854071 17038419 ~ 17040830 (+)
G28982 NA other upstream 2420520 16473898 ~ 16474381 (+)
G29814 LOC107660256 other downstream 392430 19290220 ~ 19342911 (+)
G29835 NA other downstream 833472 19731262 ~ 19786128 (+)
LOC122343071 NA other downstream 847944 19745734 ~ 19750074 (+)
LOC122343063 NA other downstream 1140143 20037933 ~ 20043453 (+)
LOC122342270 NA other downstream 1446556 20344346 ~ 20346724 (+)

Expression


Co-expression Network