hm13 (hm13,LOC107569338)


Basic Information

Item Value
gene id hm13
gene name hm13,LOC107569338
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25762532 ~ 25778521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237668.1
agagagagagagaggaggcgGGGATCTAAGAGACTACGCCGGCTGAGTTAGGAAACGTGGCCTTAAGAGAGATTTCAGCTCAGCTCAATGAGAAGCGTACACAGCTGACGTTCTCAGTGCATCTGTATTTAAGGTTCGCAGTGTTCGAAGGCGTTGGAACATGGCTGACGTGGAGCAGAACGCAGCGGTGCCGGACGCAGCCGCTAACGGGTCGGATGCAGTGAACGGGACCGCGGGCCGGTTCGTGTCCAGCGCCGAGGGCACCGCGCTGGCGTACGGCAGCTTGCTGCTCATGGCCCTGCTGCCCATCTTCTTCGGAGCGCTCAGGTCCGTGGGCTGCTCCAAGAGCAAGAATGCTTCAGATATGCCCGAGACCATCACTAGCAGAGATGCTGCTCGATTCCCCATCATTGCCAGCTGCACTCTCTTTGGCCTCTATCTCTTTTTCAAGatttTCTCACAGGAGTACATTAACTTGCTGCTGTCCATGTATTTCTTTGTGCTGGGAATATTAGCGCTTTCTCACACAATGAGTCCCTTTATGTGCAGAGTTTTCCCTGCTACCTTGCCAAATAAGCAATACCAGCTGCTGTTCACCCAGGGCTCTGGAGAAAGCAAAGAGGAGATCGTCAACTATGAGTTTGACACAAAGGATCTGATATGCCTCGGAATCAGCAGTGTAGTCGGGGTCTGGTACGTCCTCAAAAAGCATTGGATAGCCAATAACCTGTTTGGTTTGGCTTTTGCCCTGAATGGAGTTGAGTTGCTCCACCTCAATAATGTCAGCACTGGATGCATCCTGCTGGGAGGTCTGTTTGTTTACGATGTGTTTTGGGTTTTTGGAACCAATGTTATGGTGACGGTTGCCAAGTCTTTTGAAGCCCCAATTAAGTTGGTTTTCCCACAAGATTTGCTGGAGAGAGGTTTGGATGCCAGTAACTTTGCCATGTTGGGACTGGGGGACATTGTCATTCCAGGAATCTTCATTGCTCTGCTCCTGCGCTTTGATGTCAGTTTGAAGAAGAATACACGAACGTACTTCTACACCAGTTTCCTGGCTTACATTTTTGGCCTGGGTCTTACCATATTTGTTATGCACACCTTTAAACATGCTCAgCCTGCTCTGCTGTACCTGGTCCCTGCTTGCGTTGGCTTTCCAGTGCTGCTAGCCCTGTTTAAAGGAGAACTGACCGAGATGTTCAGCTATGAGTCTTCAGACGAGGTTTTGCCCCACACGCCGCGGCTCACTCATTTCCCCACTGTGTCTGGCTCTCCAGCTAGTCTGGCTAACTCCATGCAGAGTTTTGGCCTGTCGACCCCCCACCGCCGCCGACACACACCCTCCGACATGTAACAACCGAGTTCTGCTTTTCCGTTACCGTGTGCTCCCGCCTGTGCAGATACGAAGAGTCTTCACCAGAGGAGGCGGCATCTAAAGAGGAAATAACAGAATCtgataaagacaaataaaagaGCGGGTTAAGCCCTTAGTCATGTCCTAGTGATgtgctcatgtttattttaatgatgtacaACAGCTTGCTCAGTGCCTGTGTGTTCTTCTTGTTCATTTCGTTCAATTCATTTCAActtcaacgtttttttttttttttttttttttccaaggttttattttattattattattattattatcattgtacAGTATTTGACCAGGGTAGAAGTTAGGCTTTCTGAATGTAATGTGTCAGATTGCTctacagatttattaaaaatctgatGTCACAAGTCCGGTACCTATTCCTGTGTAGCTGGTTTCTGTTACTGGTTTTACTGTATGATCTCAGAAGAGATTTCATTTGTGAAACGTAAGTAATATTCCATCTTTTAGTACATGAAGGGACAAAAGCATTTGGGAtaaaatttgtacttttatgcAAGTGTAAACAAAAATGGGACCAAATATCTCCCTATTACGTGAAGCTAGTGTTTACATGTGATGTTTTTCTGGCTGTAGTTGAAGGGATCCGAGTTTAGTTTTCTATGCCATATTTGTTTGTACACCTCATGCTTTGCTTGGTAAGCATCATTTTACAGTCTCCTCTTGTGTAATCTTTATCTCAATGTCAAAGTGTACAAGTTTGAGCTTACTTGAGGAGCATTTCTTTCTCAGTTGaactttttatttgcattaaactgTGGTTTACACCACTGTACAAAAGCA
>XM_043237669.1
agagagagagaggaggcgGGGATCTAAGAGACTACGCCGGCTGAGTTAGGAAACGTGGCCTTAAGAGAGATTTCAGCTCAGCTCAATGAGAAGCGTACACAGCTGACGTTCTCAGTGCATCTGTATTTAAGGTTCGCAGTGTTCGAAGGCGTTGGAACATGGCTGACGTGGAGCAGAACGCAGCGGTGCCGGACGCAGCCGCTAACGGGTCGGATGCAGTGAACGGGACCGCGGGCCGGTTCGTGTCCAGCGCCGAGGGCACCGCGCTGGCGTACGGCAGCTTGCTGCTCATGGCCCTGCTGCCCATCTTCTTCGGAGCGCTCAGGTCCGTGGGCTGCTCCAAGAGCAAGAATGCTTCAGATATGCCCGAGACCATCACTAGCAGAGATGCTGCTCGATTCCCCATCATTGCCAGCTGCACTCTCTTTGGCCTCTATCTCTTTTTCAAGatttTCTCACAGGAGTACATTAACTTGCTGCTGTCCATGTATTTCTTTGTGCTGGGAATATTAGCGCTTTCTCACACAATGAGTCCCTTTATGTGCAGAGTTTTCCCTGCTACCTTGCCAAATAAGCAATACCAGCTGCTGTTCACCCAGGGCTCTGGAGAAAGCAAAGAGGAGATCGTCAACTATGAGTTTGACACAAAGGATCTGATATGCCTCGGAATCAGCAGTGTAGTCGGGGTCTGGTACGTCCTCAAAAAGCATTGGATAGCCAATAACCTGTTTGGTTTGGCTTTTGCCCTGAATGGAGTTGAGTTGCTCCACCTCAATAATGTCAGCACTGGATGCATCCTGCTGGGAGGTCTGTTTGTTTACGATGTGTTTTGGGTTTTTGGAACCAATGTTATGGTGACGGTTGCCAAGTCTTTTGAAGCCCCAATTAAGTTGGTTTTCCCACAAGATTTGCTGGAGAGAGGTTTGGATGCCAGTAACTTTGCCATGTTGGGACTGGGGGACATTGTCATTCCAGGAATCTTCATTGCTCTGCTCCTGCGCTTTGATGTCAGTTTGAAGAAGAATACACGAACGTACTTCTACACCAGTTTCCTGGCTTACATTTTTGGCCTGGGTCTTACCATATTTGTTATGCACACCTTTAAACATGCTCAgCCTGCTCTGCTGTACCTGGTCCCTGCTTGCGTTGGCTTTCCAGTGCTGCTAGCCCTGTTTAAAGGAGAACTGACCGAGATGTTCAGATACGAAGAGTCTTCACCAGAGGAGGCGGCATCTAAAGAGGAAATAACAGAATCtgataaagacaaataaaagaGCGGGTTAAGCCCTTAGTCATGTCCTAGTGATgtgctcatgtttattttaatgatgtacaACAGCTTGCTCAGTGCCTGTGTGTTCTTCTTGTTCATTTCGTTCAATTCATTTCAActtcaacgtttttttttttttttttttttttccaaggttttattttattattattattattattatcattgtacAGTATTTGACCAGGGTAGAAGTTAGGCTTTCTGAATGTAATGTGTCAGATTGCTctacagatttattaaaaatctgatGTCACAAGTCCGGTACCTATTCCTGTGTAGCTGGTTTCTGTTACTGGTTTTACTGTATGATCTCAGAAGAGATTTCATTTGTGAAACGTAAGTAATATTCCATCTTTTAGTACATGAAGGGACAAAAGCATTTGGGAtaaaatttgtacttttatgcAAGTGTAAACAAAAATGGGACCAAATATCTCCCTATTACGTGAAGCTAGTGTTTACATGTGATGTTTTTCTGGCTGTAGTTGAAGGGATCCGAGTTTAGTTTTCTATGCCATATTTGTTTGTACACCTCATGCTTTGCTTGGTAAGCATCATTTTACAGTCTCCTCTTGTGTAATCTTTATCTCAATGTCAAAGTGTACAAGTTTGAGCTTACTTGAGGAGCATTTCTTTCTCAGTTGaactttttatttgcattaaactgTGGTTTACACCACTGTACAAAAGCA

Function

symbol description
hm13 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

NR:

description
PREDICTED: minor histocompatibility antigen H13 isoform X1

GO:

id name namespace
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237668.1 True 2185 mRNA 0.45 13 25762532 25778521
XM_043237669.1 False 1986 mRNA 0.44 12 25762532 25778519

Neighbor

gene id symbol gene type direction distance location
si:ch73-181d5.4 NA coding downstream 927 25741596 ~ 25761605 (-)
LOC122342461 tcfl5 coding downstream 21279 25728094 ~ 25741253 (-)
kcnk15 LOC107569336,LOC107690089,LOC107706811 coding downstream 66865 25686577 ~ 25695667 (-)
mtg2 mtg2,LOC107748997,LOC107754862 coding downstream 133157 25626607 ~ 25629375 (-)
samhd1 samhd1,LOC107598800 coding downstream 137408 25610615 ~ 25625124 (-)
LOC122342356 NA coding upstream 174239 25952760 ~ 25955621 (-)
trnas-uga_31 NA coding upstream 202945 25981466 ~ 25981546 (-)
trnak-uuu_27 NA coding upstream 206313 25984834 ~ 25984906 (-)
trnas-uga_32 NA coding upstream 207444 25985965 ~ 25986045 (-)
trnas-aga_31 NA coding upstream 207784 25986305 ~ 25986386 (-)
G31352 NA non-coding downstream 59465 25702270 ~ 25703067 (-)
G31351 NA non-coding downstream 64775 25697430 ~ 25697757 (-)
G31335 NA non-coding downstream 127384 25634948 ~ 25635148 (-)
G31253 NA non-coding downstream 298988 25463153 ~ 25463544 (-)
G31250 NA non-coding downstream 325412 25436106 ~ 25437120 (-)
G31381 NA non-coding upstream 8859 25787380 ~ 25787875 (-)
G31385 NA non-coding upstream 34119 25812640 ~ 25813615 (-)
G31387 LOC107579696,LOC107756720,LOC107686478,LOC107702036 non-coding upstream 35383 25813904 ~ 25815225 (-)
G31390 NA non-coding upstream 137176 25915697 ~ 25915957 (-)
LOC122343400 NA non-coding upstream 140290 25918811 ~ 25919410 (-)
G31314 NA other downstream 201334 25559040 ~ 25561198 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other downstream 1001746 24754056 ~ 24760786 (-)
G31134 NA other downstream 1264936 24304096 ~ 24497596 (-)
G31394 NA other upstream 395178 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 545958 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 1587891 27366412 ~ 27367649 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other upstream 1600538 27379059 ~ 27382827 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other upstream 1605232 27383753 ~ 27389398 (-)

Expression


Co-expression Network