atp1a3a (atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181)


Basic Information

Item Value
gene id atp1a3a
gene name atp1a3a,LOC107665151,LOC107753791,LOC108433742,LOC107666333,LOC107549859,LOC102779181
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27622672 ~ 27649545 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043237686.1
CGTCGGCTCTTCATCTCGCCGGCATCATTCTGAGCCAGAGACGCTTCATAATCCTCTGCGCTGCATATGCTCTTCTATCATTATATCAAAGGCTGCCACATGTGCTTTTAGAAACCCATGCAGCTTGGGCCATTCTTTAAGTTTTTCCTTCATGCAGACCCCCTGTAATACATTACTATGCATGGTATCTTCAAGAatatatagatttaatttataGACAGAGGGTCGTTCAAACGCCGCCCGTCGTTATCCGTTCAAGAGcctattttttcttctctcccGCTTGACTGAAACCAAACGCAGTTTGACTGACTGAAGACACAGCGACTGACGGCTCCAAAATGGGGTATGGACGGTCGGACAGCTACCGCGTGGCAACCACGCAGGACAAAGATGAGAAGGAGTCTCCTAAAAAGGGAAAGGGAGGGAAAGACCTGGATGACCTGAAGAAGGAAGTACCGCTGacaGAGCATAAGATGTCAATTGAAGAAGTATGCCGAAAATACAACACTGACATCGTACAGGGTCTGACTAATGCCAGGGCGGCGGAGTACCTCGCTCGGGACGGTCCCAACGCTCTCACCCCACCCCCCACCACCCCGGAGTGGGTCAAATTCTGCCGACAGCTCTTCGGAGGATTCTCCATCCTGCTGTGGATcggagccatcctctgcttccTGGCCTACGCCATCCAGGCCGCCACGGAGGACGAACCCGCCGGAGACAATTTGTATCTGGGGATCGTGCTGTCCGCTGTGGTCATCATCACCGGGTGCTTCTCCTACTTCCAGGAGGCCAAGAGCTCGAAGATCATGGAGTCTTTCAAGAACATGGTTCCCCAGCAAGCTTTAGTGATCCGTGAAGGTGAGAAGCTCCAGATTAACGCTGAGGAGGTGGTGGCTGGTGATCTGGTGGAGGTGAAGGGAGGAGACAGGATCCCTGCTGACCTCAGGATCATTTCTGCTCACGGCTGCAAGGTTGATAACTCCTCCCTGACGGGCGAATCAGAGCCTCAGACTAGGTCACCTGACTGCACCCATGACAACCCTCTGGAAACCCGTAACATCGCCTTCTTCTCCACCAACTGCGTTGAGGGTACAGCTCGAGGGATTGTGGTGTGCACCGGTGACCGCACCGTCATGGGCCGCATCGCCACTCTGACCTCCGGCCTGGAGACCGGGAAGACCCCCATCGCCAAGGAGATCGAGCACTTCATCCACATCATCACGGGTGTGGCCGTCTTCCTGGGCGTCACCTTCTTCATCCTGTCAATCATCCTGGGCTACAGCTGGCTGGAGGCCGTCATCTTCCTCATCGGCATCATCGTCGCCAACGTGCCCGAGGGACTGCTGGCCACCGTCACTgtgtGTCTGACGCTCACGGCCAAGCGCATGGCCCGTAAGAACTGCCTGGTGAAGAACCTGGAGGCTGTGGAGACGCTGGGGTCCACCTCCACCATCTGCTCTGATAAAACCGGCACCCTGACGCAGAACCGCATGACTGTCGCTCACATGTGGTTCGACAATCAGATCCATGAGGCAGACACCACCGAAGATCAGTCTGGTGCATCCTTTGACAAGAGCTCTGGGACGTGGCTGGCTCTGGCCCGTGTGGCGGCGCTCTGTAACAGAGCCGTGTTTAAGGCGGGACAGGAGTCTCTACCCATCCTGAAGCGTGATGTCGCGGGTGACGCCTCTGAATCGGCTCTGCTCAAGTGCATCGAGCTCTCCTGTGGATCCGTCAAAGCCATGAGGGACAAGAACAAGAAAGTGGCTGAAATTCCATTCAACTCCACCAACAAATACCAGCTCTCAGTGCACGAGACAGAGGAGGGAACCGACAGCCACtacctgctggtgatgaaggggGCGCCAGAGCGCATCCTGGACCGCTGCTCCACCATCCTGCTGCAGGGCAAAGAGCAGCCCATGGACGAGGAAATGAAGGAGGCCTTCCAGAACGCCTACCTGGAGCTCGGAGGACTCGGAGAAAGAGTGCTGGGTTTCTGCCACTTGTTCCTGCCCGAGGACAAGTACCCCAAAGGATTCGCCTTCGACACAGACGACATTAACTTCCAGACGGACAACCTGTGCTTCGTGGGCCTGATGTCCATGATTGACCCGCCCCGAGCTGCCGTCCCGGACGCCGTGGGCAAATGCCGCTCAGCTGGAATCAAAGTCATCATGGTGACCGGTGACCATCCCATCACGGCCAAGGCCATCGCTAAAGGTGTGGGGATCATCTCTGAGGGTAACGAGACCGTGGAGGACATCGCCGCTCGACTAAACATTCCCGTCAGCCAGGTCAACCCCAGGGATGCCAAAGCCTGTGTGATCCACGGCTCAGATCTGAAGGATCTCACACAGGAGCAGATGGATGAAGTGCTGAAGAATCACACAGAGATTGTGTTCGCCAGGACCTCTCCACAACAGAAACTCATAATCGTGGAGGGCTGCCAGAGACAGGGCGCCATCGTTGCTGTGACTGGCGATGGAGTGAACGACTCGCCCGCTCTGAAGAAGGCAGACATCGGCGTTGCTATGGGGATCTCTGGATCAGACGTCTCCAAGCAGGCAGCAGACATGATCCTGCTGGACGACAACTTTGCATCCATCGTTACTGGAGTTGAGGAAGGTCGTCTGATCTTTGATAACCTGAAGAAGTCCATCGCTTACACACTGACCAGCAACATCCCTGAGATCACACCCTTCCTGTTCTTCATCATGGTCAACATTCCTCTTCCTCTCGGAACCATCACCATCCTCTGCATCGACCTGGGCACTGACATGGTCCCTGCAATCTCATTGGCTTATGAAGCAGCAGAGAGTGACATCATGAAGCGCCAGCCTCGTAACCCTCACAGGGACAAGCTGGTGAACGAGCGTCTCATCAGCATCGCCTACGGACAGATCGGTATGATTCAAGCCCTGGGAGGGTTTTTTAGTTATTTCGTGATTCTGGCTGAGAACGGCTGGCTTCCCAGTCTTCTGGTGGGCATCCGGCTAAACTGGGACGATCGCTCCAACAATGACCTGGAGGACAGCTACGGACAGCAATGgACGTACGAGCAGAGGAAGATCGTGGAGTTCACCTGTCACACGGCCTTCTTCGTCAGTATCGTGGTGGTGCAGTGGGCCGACGTCATCATCTGCAAGACTCGACGCAACTCTGTGTTCCAGCAGGGCATGAAGAATAAAATCCTGATCTTTGGCCTGTTTGAGGAGACGGCTCTCGCTGCCTTCCTGTCTTACTGCCCCGGCATGGACGTGGCCCTCAGGATGTATCCTCTCAAGCCCAGTTGGTGGTTCTGTGCGTTCCCTTACAGcttcttaatttttgtttatgatGAGATCCGAAAACTTATCCTGCGCCGAAACCCAGGAGGTTGGGTTGAAAAGGAGACATACTACTGAATTGTCAAATACTTCACTCATCGATTCTCCCTCATTCCCTCACTATCTCTttcttcatctttctctctctctctctctctctctctctctttttcacattCCAACCATTCCTCCAAAACCGAAACAACCACGTCACTCCTTCCTTTTACCGAAATAACAAGCAAGAAGATGAGAAGCCCGACCACAGAGGAAGACGACAAAGctcctttgtttttgttttgttccgtTTCTGCCCAAAGACTACAGCTGAATCTGCCAGTATGATAGTAGTAAGGTTTACCACGCTGTAATGGATGTCACCCAGCAGCTGCGTTCAGACTCAATCACGGTCGACAGGGACTCCTGTACAAACACTGCCACGCTAGATTACTGTTATCTTTACCCTCCAAAAATACTAATAACCTGAAGATCATAACTCATTTAGACCCTCGCCCTCTGCTGGGGAAAAAGAGGAGCACAGCTTTCCTCACCCCTATCCGGCacctgtctgtctttctttctttttttttcaatgtgctTCTTGTTTTTCgagtgttgtttttattaatcattcataacttttttgttcgatttttttttttttttacgttagaAGTGTGTCTGAGAGCTGCTTGGTTTCATTTTTCTCGGACATGACAAAGCACACTGCCACcctttcactctttctctctctctctctctctctctctctctttctctcgctcctCCTTTCCTTCCCCTTTTATCCTGCACTCCCCCCTCCCTCCCAGCTCTTGCTCCTtctgtccgtctctctgtcCCCGTCTGTTTGTCTGTTCGTGAACGATGTGAAGAAGCCGCCCTCCTCTATCCGCCCCCGTTTCCCCTCTTTCCCcgttaaaaaagagaaaatacaatCTTTCTGTGTCCTAGGAAAAAGAGACTTCTCTCTGATTTCATTGTTTAAATAAgtgcagaaaaaaatggaataaaagcAATGTACCAATACGtgaaacaacagcaaaaaatgaaataaaaaagaaggaTCTCTCTTTTCTCA

Function

symbol description
atp1a3a Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pancreas primordium; pronephric duct; and trigeminal placode. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

NR:

description
sodium/potassium-transporting ATPase subunit alpha-3

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0021591 ventricular system development biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0007626 locomotory behavior biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043237686.1 True 4431 mRNA 0.52 21 27622672 27649545

Neighbor

gene id symbol gene type direction distance location
pvrl2l pvrl2l,LOC107549846,LOC107752518,LOC107665153,LOC107753776,LOC107554349,LOC107666334 coding upstream 23414 27460481 ~ 27599258 (+)
tcf19l LOC107752517,LOC107665168,LOC107549845,LOC107666307,LOC107753767,LOC107554348 coding upstream 180472 27436433 ~ 27442200 (+)
LOC122342913 LOC107752534,LOC107665115,LOC107549827 coding upstream 186644 27419543 ~ 27436028 (+)
trnav-uac_5 NA coding upstream 398686 27223914 ~ 27223986 (+)
LOC122342370 NA coding upstream 412070 27207736 ~ 27210602 (+)
LOC122342440 LOC107753802,LOC107554351,LOC107666349,LOC100537384 coding downstream 15560 27665105 ~ 27711406 (+)
erf erf,LOC107753815,LOC107666335,LOC107554353,LOC107549829,LOC107665162,LOC107752521 coding downstream 75576 27725121 ~ 27751872 (+)
cica cica,LOC107554354,LOC107752539,LOC107753834,LOC107665116 coding downstream 106980 27756525 ~ 27778786 (+)
gsk3aa gsk3aa,LOC107549848,LOC107665161,LOC105892068 coding downstream 129905 27779450 ~ 27792872 (+)
LOC122342539 si:ch73-42k18.1,LOC553308 coding downstream 149566 27799111 ~ 27820247 (+)
LOC122343300 NA non-coding upstream 3011 27607787 ~ 27619661 (+)
G31443 NA non-coding upstream 212077 27363588 ~ 27410595 (+)
G31438 NA non-coding upstream 389240 27233096 ~ 27233432 (+)
G31429 NA non-coding upstream 424406 27197887 ~ 27198266 (+)
G31428 LOC107574244,LOC107838241 non-coding upstream 537965 27084317 ~ 27084707 (+)
G31520 NA non-coding downstream 62701 27712246 ~ 27713190 (+)
G31540 NA non-coding downstream 148428 27797973 ~ 27798209 (+)
G31543 NA non-coding downstream 173861 27823406 ~ 27823705 (+)
G31549 NA non-coding downstream 262772 27912317 ~ 27951998 (+)
G31557 NA non-coding downstream 275902 27925447 ~ 27979133 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other upstream 216584 27360843 ~ 27406088 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other upstream 251476 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other upstream 264509 27356812 ~ 27358163 (+)
G31384 NA other upstream 1809047 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1927291 25693802 ~ 25695381 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 557413 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 569188 28218733 ~ 28221417 (+)
G31636 NA other downstream 635482 28285027 ~ 28320694 (+)
LOC122342379 myo7aa,myo7a,LOC107660700,LOC107735900,LOC107600840 other downstream 647757 28297302 ~ 28317582 (+)
G31649 NA other downstream 700808 28350353 ~ 28353226 (+)

Expression


Co-expression Network