CI01000004_12562823_12563491


Basic Information

Item Value
gene id CI01000004_12562823_12563491
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12561318 ~ 12563813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_12562823_12563491.mRNA
CGATAAATTCCCCTGGAGTTTCTTTGATGCAGTCTGATATTCTGTGTGGCATTTGAAATGGCCTCGCCGTGACACAAGTCTAAAGGCCCATCTATTTGAATTACTCTGAATAAGAGGACCTGTTCTCCAGATGCATGGATTAAATTCTGTTTTCTGTACAAGCATGTGACATCTCACAAGTTGCAATATAAAAGTTTGGGGTCAGTAAGATTTTTTAATGTTTTTGAAAGAAGTCTCTTGCTCACTATGGCTGCATTTGTTTGATCAAATATACAGTAAAAACAGTAATATTGTAAAATATTATTACTATTTAAAATAGCTGTTTTCTATTTGAATATATTTTAAAATGTAATTTATTCCTGCGATGGCAAAGCTGAATTTTTAGCAGCCATTACTCCAGTCTTCAGTGTCACATGATTAAAACATTTCATATTATCATTACCTTTGATGATATTTTTTTTAAAAACTTTTTCTGTGGAAAACATGATACATTTTTCCAGGATTCTTTGATGAATAGAAAGCTTTTGTGACATTATAAATGTCTTTACTGTCAATTTTGATCAATTTAATGCATCCTTCCTGGATAAAAGTATTAATTTCTTTAAATACAATCTTTCTAACCCCAAACGCTTGAACAGTAGTATATTTCACTTTTGTTTTATTTATTTATTTATTTTTTTACCCTTTTTGACCCTTTTTAATGATGGTTGATGATAAAAAATAAAGGAATCTAATTATGTTAATTTTGATTTGTAATAATGGAAGCAGTCATTTCTAAATTTCATGTAAGTTAAATGTCCATTTGACTTGTAATTGATCACTTTCGGGTCACCCTCAAGAGATTGGCGATGATGGACAGACGCACACGTGCACAAATAGACACAGATTCGCTAAAATGCTTCTCATTAAACCCACTCACACTTTTGCCAATCAGTGAATCTTATCCTCCAGGGCTTCTTCTCGGGCTGTTTGGCTGCAGCTGGGGTCAAGGGGTGAAGTGCGGCTAATTTATTCATTCAGTCAAATATCCTGTGCAGATGGCAGGCTGATACGATATCAGTATGAGAATCCCATTGGAGGCAGAGGACCAGGGTGTTCACATGAGCAGGGCCGCGCTCTTATCTGATGAGCGCGCGGCTCTTATCTGCCTCAGACGCCGTTCTGCTCCGCAGACGGGGAGATGGAGTAAGAGGCTTATATGTGATCTGAACCTCAGATCTGTAGGGGGAAACTTTCTATTTCAGAAAGGGAAAAGTAGGCAAGAGTTTCAGAGTGTTTTTAAGTGGTTTAACTCCTCCTCTGTTCAACTTTCTTCAGGTGGAGGACCATCGAGGATGAGCCGCCAGTGAGAGTGACCCCGATTCTGCCAGAGTGTCGACAGCGCAAAAGTTTGCACCATTCTGCCCATACCGTTTACCCCGTCTCTCTTCTCTCCACCCCTCCCCCACGCCCCTCTGCTCTCGCCCCTAACCCCCCCTCCGCCCAACCCCAGCCCAGTCTCCAAAATGGACTTGCACCGGGCGGCTTTCAAAATGGAGAGCTCCTCCTACCTGCCCAACCCGTTAGCATCCCCAGCGCTAATGGTGCTAGCATCGACAGCGGAGGCCAGCCGCGATGCCTCCATCCCCTGCCAGCAGCCTCGTCCGTTCGGTGTGCCGGTGTCCGTGGAGAAGGATGTTCACCTCCCCTTCAACAACGGTTCCTATACGTTCGCCTCCATGTACCACCGCCAGGGTGCTGTACCGCCAGGCTTCCCTAACAGAGACTTCCCTCCTTCCCTCCTACACCTCCATCATCAGTTTGCCCCGCCAAATCTGGACTGCTCGCCAATAAGTATGCTTAACCACAGCGGCGTCGGGGCCTTCAGGCCCTTTGCTTCTCCTCCGGAGGACCGTGATGGAGCTGGAGGGGGATACCAGTCCGCCTTCACCCCTGCCAAGCGGCTAAAGGGCTGCCTGGAGGCCGAGGCCTCCCCGCACCTGCGCTACTCGGACGCAGAAGGGAAAGAGTACGACTTCGGCGGTGCTCAGATCCCCTCCAGCTCACCTAGCGCTCTCAAAGCCGTGGAAGATGCAGGGAAGAAGATCTTCGCAGTGTCAGGCCTGTTGTCAGACCGAGAAACCTCTTCCAGTCCAGAGGATCGCATTGAGCGCTGTGAGTACACTTTTTTTTAAATGAACTGCACTATTAATGTTTGCTGTTATATCTGTACACCTTCAAATAACTTGACTCCTTTTAGAGTCTTCTACTACTTTTAGATCCCAAAATGCATTTTATTTTTGTCCTGTATGGATCTGGTTCGCTTACACACATTTTTCTGATACCTTTTGTTGTATTCAACAAGCTACCTTCTCTAAGATGGGTCTCAAACATCTAATAGGTTAAACTAAGTTAGTTAACTAAGTTAGTTCAACAGTTAGGGTGCTTGTAGAAAAGCATTTATAATAATGGGGAAAAAACTATTAAAATTTTAAATGGAAATTTTTTTTATAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_12562823_12563491.mRNA True 2496 mRNA 0.44 1 12561318 12563813

Neighbor

gene id symbol gene type direction distance location
CI01000004_12553125_12559468 NA coding upstream 1442 12552774 ~ 12559876 (+)
CI01000004_12426409_12429382 TMEM53 coding upstream 131848 12426409 ~ 12429470 (+)
CI01000004_12422242_12423747 OPN4.1 coding upstream 136625 12422080 ~ 12424693 (+)
CI01000004_12418456_12419641 NA coding upstream 140299 12417696 ~ 12421019 (+)
CI01000004_12412259_12417501 NA coding upstream 143801 12412135 ~ 12417517 (+)
CI01000004_12594138_12621268 NA coding downstream 29350 12593163 ~ 12621791 (+)
CI01000004_12625701_12630744 NA coding downstream 60508 12624321 ~ 12630926 (+)
CI01000004_12646972_12652534 NA coding downstream 83025 12646838 ~ 12652570 (+)
CI01000004_12696326_12707951 NA coding downstream 130564 12694377 ~ 12707996 (+)
CI01000004_12719753_12721562 KLF17 coding downstream 154603 12718416 ~ 12722033 (+)
G32296 NA non-coding upstream 59437 12501478 ~ 12501881 (+)
G31969 NA non-coding upstream 73875 12486933 ~ 12487443 (+)
G31967 NA non-coding upstream 76412 12484698 ~ 12484906 (+)
G31959 NA non-coding upstream 87913 12473123 ~ 12473405 (+)
G31952 NA non-coding upstream 97944 12462530 ~ 12463374 (+)
G32350 NA non-coding downstream 99766 12663579 ~ 12663812 (+)
G32371 NA non-coding downstream 136802 12700615 ~ 12700910 (+)
G32382 NA non-coding downstream 141151 12704964 ~ 12781485 (+)
G32414 NA non-coding downstream 245804 12809617 ~ 12810075 (+)
G32431 NA non-coding downstream 289149 12852962 ~ 12853804 (+)
G31865 NA other upstream 366171 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 893659 11666900 ~ 11667659 (+)
G31710 NA other upstream 918918 11637251 ~ 11642400 (+)
G30797 NA other upstream 2063530 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3580334 8976254 ~ 8980984 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1459734 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2527431 15091200 ~ 15097173 (+)
G34220 NA other downstream 3375544 15939357 ~ 15939950 (+)
G33815 NA other downstream 3499602 16063415 ~ 16066464 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location