trnah-aug


Basic Information

Item Value
gene id trnah-aug
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26986065 ~ 26986137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_908
gggccagtggcgcaatggataacgCGTCTGACTATGGATCAGAAGATTCTAGGTTCgactcctggctggctcg

Function

NR:

description
PREDICTED: uncharacterized protein LOC109530881 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_908 True 73 tRNA 0.56 1 26986065 26986137

Neighbor

gene id symbol gene type direction distance location
trnay-gua_25 NA coding upstream 55427 26930552 ~ 26930638 (+)
LOC122342366 LOC107709221 coding upstream 218892 26764953 ~ 26767173 (+)
trnav-aac_2 NA coding upstream 339108 26646885 ~ 26646957 (+)
trnav-cac NA coding upstream 341108 26644885 ~ 26644957 (+)
trnav-aac_1 NA coding upstream 341861 26644132 ~ 26644204 (+)
LOC122342369 NA coding downstream 18564 27004701 ~ 27006306 (+)
trnas-aga_109 NA coding downstream 22484 27008621 ~ 27008702 (+)
trnas-uga_107 NA coding downstream 24837 27010974 ~ 27011055 (+)
trnas-uga_108 NA coding downstream 27495 27013632 ~ 27013713 (+)
trnak-uuu_101 NA coding downstream 29002 27015139 ~ 27015211 (+)
trnay-gua_38 NA non-coding upstream 780 26985195 ~ 26985285 (+)
trnar-acg_36 NA non-coding upstream 1337 26984656 ~ 26984728 (+)
trnae-uuc_29 NA non-coding upstream 2399 26983595 ~ 26983666 (+)
trnar-acg_35 NA non-coding upstream 2752 26983239 ~ 26983313 (+)
trnay-gua_37 NA non-coding upstream 3607 26982372 ~ 26982458 (+)
trnae-uuc_30 NA non-coding downstream 282 26986419 ~ 26986490 (+)
trnay-gua_39 NA non-coding downstream 479 26986616 ~ 26986702 (+)
trnay-gua_40 NA non-coding downstream 1901 26988038 ~ 26988124 (+)
G31427 NA non-coding downstream 6897 26993034 ~ 26993354 (+)
trnar-acg_37 NA non-coding downstream 7772 26993909 ~ 26993981 (+)
G31384 NA other upstream 1172440 25812631 ~ 25813625 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other upstream 1290684 25693802 ~ 25695381 (+)
LOC122342771 ss18l1,LOC102784650 other upstream 1297835 25635042 ~ 25688230 (+)
LOC122342408 NA other upstream 2218513 24743848 ~ 24767552 (+)
G30882 NA other upstream 2257618 24721424 ~ 24728447 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 311399 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 370675 27356812 ~ 27358163 (+)
LOC122342806 znf384l,LOC107665159,LOC107549826,LOC108433737,LOC107554334,LOC106569967,LOC107754029,LOC107752514,LOC105892077 other downstream 374706 27360843 ~ 27406088 (+)
G31614 capn5a,capn5,LOC107665347,LOC107660684,LOC107600851,LOC106535735 other downstream 1220821 28206958 ~ 28216248 (+)
G31619 capn5,capn5a,LOC107713096,LOC107600851,LOC107660684 other downstream 1232596 28218733 ~ 28221417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnah-aug NA coding NW_023493753.1 JAAXML020000579.1 80423 ~ 80495 (-)
mexican tetra (Astyanax mexicanus) trnah-aug NA coding NC_035917.1 CM008320.1 16578565 ~ 16578639 (-)