ch25hl3 (LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337)


Basic Information

Item Value
gene id ch25hl3
gene name LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12930223 ~ 12935152 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239686.1
aacaatgttcCCTTTTACTTTGTGTAGCCCCATGTCATTTACCAGCGCGTTTAATAAACGCCATCAACACTATCGCGAGCCAAAGCTGCTCATCGATACAGTTAACGGGTGTTTTATGTCGCAAAATCTtttaagcaaagaaaaaaaatctgcgttttaaaaaaaatatatatatcgaGTGATTTTGTGAGTTGATAAAGTCGCGGTTGTGGGAGGAGAGCGTTTACATTCCTAGTGCCCGTAAAGAGCTCCGTCAGAATGAAAGCGATCTCCACACCGTTTCCATCAGAAGACGACACATCTGGAGGACATCAtcgccgctgctgctgctgcattcGGGGTTATGTAGAAACAACAGCAGTCCGCAAAAATGACTCTCTTGTTGATTTTCAGAAGCGATGCACTTCTTCAGTGGATTTGGGACTTCATATATGCGGAGCGTCATGTGTTCCTCATGTCACCCCACATTACCGTTTGCGCAGCTTTCAGCACGCATCTCATCTTCTCTGCTCTCTTCATGCTTCTGGACGTGTTGAGTCCGCACGTGGGATGGCTCCATAAGTATAGGATACGCCGTGAAGTCGTTGGCTTGCATCAGTGGTTTCGATGTGCCGCTCGAATTTTATGGAAATACATAGTTGGCGTTTTGCCATTAACTGCGCTGTTTCTATCGGTACGGCGCGCGCATTTCCCGGAGAGGGCACCGTCTTGTTTCCATGCCTTCAAGGAATGTGTCTCATGCATGCTCGTATTCGATACACTGTTCTTCATTTGTCATTACACCATTCACAAaattccctggcTGTACCACAGTGTACACCACCTTCACCATCAGAACAGAGACACTTTTGCTCTGGCAGCTCAAGACTCCAGTATTTCTGAACTGCTGTTTCTTCAAACTCTTGCATTTATAAGCGCCATGCTGGTAGGCTGCCACCCGTTTAGCGAAATGCTTTTCCATCTGGTTAACACGTGGATGGCCGTGGAGGACCACTGTGGATATGACTTTCCTTGGGCCCTGCACCGGTTGTTGCCGTGCTTTGGCGGTTCGCCGCACCACCTGGCCCACCACCAGCACTTTAAAGGGAACTTCGCACCTTATTTTAGACACTGGGATTACATCTTTGGCACCTCATTGCACATTCCGcatagcATCCACCATGGCCGACGGAAAGGACATACTTCCACCACCTTCTCAATCTCTGTTCTCTCTATTTATCCCTCTCTTTCCATTTTGATTGTGATGAACTACACTTACATAACACATtcattcagcacacacacacacacatgttggcatttgtggtttatgaggactctccgtAGGCGTAATGCTTTTTGTCCTGGACAAACTGTATGTGCCATCGTTCTATATCTAACCCAGCCCATTACAAGAAACCACACAgaatttactgtttttttacgCCTTTTGAATTATGAGAATATTGACAGTGTCCttataaaccaccttcaaattgtaaaaCCTCCACATGAACCACAGTTGCCAACCCCCACACACAGGCTGTACACACATGCTCACGTATAGTGCCTGAATATGAAGTCCTGTAATTAGATCATTTAGAAAttagaaatttt
>XM_043239687.1
acaatgttcCCTTTTACTTTGTGTAGCCCCATGTCATTTACCAGCGCGTTTAATAAACGCCATCAACACTATCGCGAGCCAAAGCTGCTCATCGATACAGTTAACGGGTGTTTTATGTCGCAAAATCTtttaagcaaagaaaaaaaatctgcgttttaaaaaaaatatatatatcgaGTGATTTTGTGAGTTGATAAAGTCGCGGTTGTGGGAGGAGAGCGTTTACATTCCTAGTGCCCGTAAAGAGCTCCGTCAGAATGAAAGCGATCTCCACACCGTTTCCATCAGAAGACGACACATCTGGAGGACATCAtcgccgctgctgctgctgcattcGGGGTTATGTAGAAACAACAGCAGTCCGCAAAAATGACTCTCTTGTTGATTTTCAGAAGCGATGCACTTCTTCAGTGGATTTGGGACTTCATATATGCGGAGCGTCATGTGTTCCTCATGTCACCCCACATTACCGTTTGCGCAGCTTTCAGCACGCATCTCATCTTCTCTGCTCTCTTCATGCTTCTGGACGTGTTGAGTCCGCACGTGGGATGGCTCCATAAGTATAGGATACGCCGTGAAGTCGTTGGCTTGCATCAGTGGTTTCGATGTGCCGCTCGAATTTTATGGAAATACATAGTTGGCGTTTTGCCATTAACTGCGCTGTTTCTATCGGTACGGCGCGCGCATTTCCCGGAGAGGGCACCGTCTTGTTTCCATGCCTTCAAGGAATGTGTCTCATGCATGCTCGTATTCGATACACTGTTCTTCATTTGTCATTACACCATTCACAAaattccctggcTGTACCACAGTGTACACCACCTTCACCATCAGAACAGAGACACTTTTGCTCTGGCAGCTCAAGACTCCAGTATTTCTGAACTGCTGTTTCTTCAAACTCTTGCATTTATAAGCGCCATGCTGGTAGGCTGCCACCCGTTTAGCGAAATGCTTTTCCATCTGGTTAACACGTGGATGGCCGTGGAGGACCACTGTGGATATGACTTTCCTTGGGCCCTGCACCGGTTGTTGCCGTGCTTTGGCGGTTCGCCGCACCACCTGGCCCACCACCAGCACTTTAAAGGGAACTTCGCACCTTATTTTAGACACTGGGATTACATCTTTGGCACCTCATTGCACATTCCGGTAAATGTGAGAGGCAACAGATAGGGGGAATCAAGGTTAATTGAGCCAAACATTGTACATAAAAGACAATAAAGATTTTGAATTCATTTGAGAAGTGAGACTTAAAAGTGTCCCGTTGTATCTGCTTTCACCTTATATGAACTTGCATATGATAACCCAGTTTTTGTAAAGCCATCTTTTATGTACAATGGAACTGAATGGCTTAATTCGTTGCACTAAACTCCGCTCATTTGTAAATGTACGTATTCATTGTACTTATAGATATGTATGAACAGAATTTACAAATGGATTTGTTCATTTCTGTTTATACATATCTATTTGTGAATTCTAGATTATGGTTAATAGCAACCTTTGCCTTATACATGTGTAATGAGCTGAATCTAATCCGTACTAATTCTGcttataataatcagaaaacGTAGATTTTGTACTCGGCTTAGAAGtcaatgtatatttttgaataCTTGTTATTTGCCGGTGTTTTCATGttgtatatttaacataatttttttgttttgttaagatATACATGTTACTAACATaacttttaaacatgttttgtacTGTCTGagacagtaaaatatatttc
>XM_043239688.1
GTCACGCTTCTCACTTGGCACTGAGTTTCTAATATTGCACATTTGAAGCTTTGGAAACTTGGATGACAAAGTTTAACGTCTtctatttattgtcattttaaccgttttattaaattagactCAAGGCCACCTTTAGCTGACACGGGTCCACTGGGGACACTGGTTAAATTTGCAGCCCAGTCTCACGAAAACGTATAAAAATAGTATGTAGTTATGCTTATATACATAGTacgcaaaataaaagcaaaatctcGTGGTATTGATACttaaaaatggactttggcgTATATGACACACGTGTTTAGAGTGCATATAATAAATTAGCTTTCGCCTGAAGACACAGAAGTGGgtttatgaggaaaaaaaagagatgaatttCAAACACAGaattccctggcTGTACCACAGTGTACACCACCTTCACCATCAGAACAGAGACACTTTTGCTCTGGCAGCTCAAGACTCCAGTATTTCTGAACTGCTGTTTCTTCAAACTCTTGCATTTATAAGCGCCATGCTGGTAGGCTGCCACCCGTTTAGCGAAATGCTTTTCCATCTGGTTAACACGTGGATGGCCGTGGAGGACCACTGTGGATATGACTTTCCTTGGGCCCTGCACCGGTTGTTGCCGTGCTTTGGCGGTTCGCCGCACCACCTGGCCCACCACCAGCACTTTAAAGGGAACTTCGCACCTTATTTTAGACACTGGGATTACATCTTTGGCACCTCATTGCACATTCCGcatagcATCCACCATGGCCGACGGAAAGGACATACTTCCACCACCTTCTCAATCTCTGTTCTCTCTATTTATCCCTCTCTTTCCATTTTGATTGTGATGAACTACACTTACATAACACATtcattcagcacacacacacacacatgttggcatttgtggtttatgaggactctccgtAGGCGTAATGCTTTTTGTCCTGGACAAACTGTATGTGCCATCGTTCTATATCTAACCCAGCCCATTACAAGAAACCACACAgaatttactgtttttttacgCCTTTTGAATTATGAGAATATTGACAGTGTCCttataaaccaccttcaaattgtaaaaCCTCCACATGAACCACAGTTGCCAACCCCCACACACAGGCTGTACACACATGCTCACGTATAGTGCCTGAATATGAAGTCCTGTAATTAGATCATTTAGAAAttagaaatttt

Function

NR:

description
PREDICTED: cholesterol 25-hydroxylase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239686.1 False 1596 mRNA 0.45 3 12930223 12935152
XM_043239687.1 True 1735 mRNA 0.42 2 12930224 12933333
XM_043239688.1 False 1191 mRNA 0.42 3 12931021 12935152

Neighbor

gene id symbol gene type direction distance location
erlin2 erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530 coding upstream 3725 12916170 ~ 12926498 (+)
fbp1b fbp1b,LOC107700920,LOC107718665,LOC107596168,LOC107655925,LOC107757529 coding upstream 14203 12912655 ~ 12916020 (+)
ptger4b ptger4b,LOC107700922,LOC107757528,LOC107596171,LOC107596756,LOC107655926 coding upstream 37944 12886229 ~ 12892279 (+)
pxmp2 pxmp2,LOC107597355,LOC107595932,LOC107727154 coding upstream 100619 12826590 ~ 12829604 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding upstream 104045 12820605 ~ 12826178 (+)
ar ar,LOC107757532,LOC107596701 coding downstream 30784 12965936 ~ 13022773 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding downstream 116515 13051667 ~ 13056360 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding downstream 131284 13066436 ~ 13107572 (+)
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding downstream 216469 13151621 ~ 13157237 (+)
nalf2 fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536 coding downstream 399603 13334755 ~ 13338138 (+)
G35905 NA non-coding upstream 44289 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 44939 12885005 ~ 12885284 (+)
G35903 NA non-coding upstream 47711 12882260 ~ 12882512 (+)
G35847 NA non-coding upstream 161673 12767948 ~ 12768550 (+)
LOC122345920 NA non-coding upstream 283135 12645284 ~ 12647088 (+)
G36062 NA non-coding downstream 173480 13108632 ~ 13108853 (+)
LOC122345423 NA non-coding downstream 364603 13299755 ~ 13312652 (+)
G36109 NA non-coding downstream 388881 13324033 ~ 13324383 (+)
G36140 NA non-coding downstream 584821 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 631825 13566977 ~ 13580798 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 122872 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 224978 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 401433 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 674551 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 987113 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 1048945 13984097 ~ 13985706 (+)
G36495 NA other downstream 1355268 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1364891 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1397871 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1412410 14347562 ~ 14349991 (+)

Expression


Co-expression Network