G24229


Basic Information

Item Value
gene id G24229
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 26184 ~ 35763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU27344
AGAGGTTCAGGGTTGAATGCCAACGTCATCAGCAGCTGCATTCGCTCCGTGTCTTTAAGGTTCTTCAGCAGGAAGCTTCCAGAGTCCTTAGTCTCTGCGTACCTCCTGACCACTCTGTCCAGAAGCCTCTGCGAGGGGCAGTGCACTAGATCCGACCAGCCCTCCACCACCTCTGGGGTCAGCAGTCTTACGTCCCCGTTAAGTCGGGCAAACTCCGTTTTGTACATACCCTGAATGAGATCACAGCGCGGTCTTCCAGTGGCCCGTTTGCAGATCTTCTGATCAATCTCTGCCAGCTCCTGGTTGGAGCCCAGGCGCTTGAGCACGACCCTGCGTGTTCCTTCCCTGGGTTCTCCATATTGGGCAAAATAGACGTTCTTTACATTGAAAAAGTCTAGGAAACGCAGGCGACCCCACATCTCGAAGGTCACCTGGCCATTCATGAACTTGCGGCACCAGCTAGTGCCGAAGCAGGCCGGACACTTGTTGAGGCCAATGAATCGGCGGTCAGTAAGCTCGTTCCTCTGAAACGAGGCGAACAGGTTGTGAGTGTTCATCAGCAGAATAACAAAAAGCGCTACAATGAAGAGAAACTTGCCACATCGGTAGACGCGGCCAAATTTGAGCGACCGCAGCATGCTGATTGGCTGCAGCGCACTGAAGATGGATGCAGTTAATCTTCGTCAATGTGGGTGTTCCATCACTGCTATGTGTAATATAATTATCATCCCCATCACGTTCACATTAATTAGAGTGGTCTATGCTGGCAGCAATGTTGCCTGGTAAGCCCATCGGTTTCAAGAGCCCCTCTCACCATGTTTTACAGGAGGGCTTTCTGGTTTTATGTTGAGTTCAGGCATTAAGCTGCAACATCAGTAATCCACTCTACCAAATAAAAATGTGTGAAAGTACGGGTTTATTCCACTTGCTCGAGGAAGCGTTCGTTGTCTATTAATGAACTCCTCTCTCTTTATACCAGCCGCGTGCATCGATGCTTTCCCACGTTGTCCATGTGTTGCGTGCACACTCCTATTCCCTTTTCTTTATTCCTTCAAAAATCGCAAGGGTTGTCTTCTCAATCTCGAGACAAGTTCAGTCTGCGAGCGTTTAAGCAGCTGCACAAAAGATCCGACTTCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27344 True 1139 lncRNA 0.26 2 26184 35763

Neighbor

gene id symbol gene type direction distance location
CI01000004_00098017_00119297 PLS1 coding downstream 62254 98017 ~ 119618 (+)
CI01000004_00150251_00175611 EPHB3, EPHB3A coding downstream 114488 150251 ~ 176659 (+)
CI01000004_00226186_00234811 NA coding downstream 190423 226186 ~ 236052 (+)
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding downstream 230328 266091 ~ 278846 (+)
CI01000004_00291677_00292816 NA coding downstream 255579 291342 ~ 292826 (+)
G24251 NA non-coding downstream 47903 83666 ~ 92290 (+)
G24279 NA non-coding downstream 82149 117912 ~ 124498 (+)
G24339 NA non-coding downstream 250104 285867 ~ 286078 (+)
G24293 NA non-coding downstream 304372 340135 ~ 344681 (+)
G24347 NA non-coding downstream 320339 356102 ~ 356397 (+)
CI01000004_00467911_00469949 AGRP2 other downstream 432080 467802 ~ 471846 (+)
CI01000004_01332533_01345585 SCP2 other downstream 1296702 1331583 ~ 1346008 (+)
G25187 NA other downstream 1568779 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1828396 1867166 ~ 1868986 (+)
G25329 NA other downstream 2047294 2083057 ~ 2085707 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding NC_056700.1 CM032069.1 1197427 ~ 1203014 (+)