G24251


Basic Information

Item Value
gene id G24251
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 83666 ~ 92290 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU27374
TGTTTATAGGATTAAGAATGTAGAATAAGGTCATGCAGAATAAGGCATTAATATGTGCTTAATGAGTACTAATAAACAGCTAATATTCTAGTAATATGCATGCTAATAAGCAACTAGTTAAAAGACCCTAAAATAAAGTGTTACCATAGATAGATAGATAGATAGATAGATAGAGAACATTTTTTTCAAAACATTTCAGTTACAGAAAGGAAAAAAAGAAACATATGGAATAGTTCTGGAAAGTTCTGCCATCGTTTATTCCCCCTCATGTTGTTCTAAACATGACTTTCTTCTGTGGAAAACTGTATTACTTTCTTTCAGACTTTTTCTTTTTGAAAAGTGTTTAAACTATTTTTGACTATAGCAAAAGTATTTGGGATCGAAAATTAATTAAGAATTAAAAACCAATAGAAAATTGTGTTTCATGATGGGGACATGAAAATGTACTGCATAACAAGAATGATATGTTTTAGTGTGTTAACCCAGAGACAAAGTCTACAGTAACTAGAGCACATCTCAATGATTCGATCAGAACTGCACCCATCTGAATTAGACACACAGGACAGTGAGTCTATTGCTATTTACATAACCTCTTTAGTTTGTGCAGTGCTGAAAGCAGTAAATGCAAAATCTAAATGTTTTGATTAAATAAATATCTTGGCGTACCTTTAATAATCAATGACACGTCATTCACAAAGTTTTTTTCTTTTTTTTTCTTTCTTATTTGCTCAAACAGATACATTCCACTGAGCCATTAAGCGTTGAACATAAATAACAGTTTGTACAGAATGAGGAGTATCAGGCTGTTATCAGCACAAATGCAAAACATAGAACGTCTTTGGCGGTGATTCATATTTTGGGTACTGTCAATAGCGGTCTGCTCAAATCCTTAGCCTCACCGGCTGTACGAACGCGCAGGTATCCCAGCAGAGACATCGCGTGCTGACAATACTCCTCCACCTGTCTGATCTGCTGGTAGTTCAGCACAGTTCTCCAGGCGCTGGCCGCTTGTGTCGCGTTCCTGGAGGATACGATGAAGGGTTTGGTGGAGGCGTTTGGTCCTGTTGTCATATTCATAGCAAAGATCTCAATTTCGTGATTGGCTGAAAGATTAACAAAGCGATAAACATTCCGAACAGTTTTTATGGGGTTCTCCACCAAGTCCTCGTAGCGTACCGTCATGTATTTGCCTTTGAACCAGTTGGGAGGGTAAAGAGCAGTTTTCAGAGTTCTAGACATCTGTTCACAGATCACCTCCATGGCTCCGATGGAGTGGTAGTCTGAACCGTCTTTTTTGTTCATTTTGTGGTTGGGGTCCACAAATGGCACACGACGAAGTTTGGGGTCTCTGCTGCGTACGACTTGCAAATTCTCCCGAATGAGTCCATGTCTAGATTTAATCCTGGAGTTGGCCACCGCCCTGGGGTCTCGAACCAGGTGGATCACTTTCAGATTCAGAGACGGGTCCTCCATTAGAGGAGCCAGAATGTTAACGTCCAAAATGCGAACTCCCTTTATCACTATCGTGTTGTATTTTAAACACTCTTCCTCCAGCATCTGAAGGCTCTGTGGAGGGCACTTTTTACAAACCTTTTCATCCACCATTCCCACCACATCTTTCCTGTAAGACGAACAGAAGGGGTAGGAGCAGATGACCTTATTTATGGCAGCCCCAAACAGTCCAAGAGAGGTTATGTTCTTCCCCCCAGGACTGTTGTACAACTGAAAAACTGAGAAATCACACCTGTAAAGAGAACTCAGCATGTCCCTGGCTGCTCCTTGGAGGGACACCGCATCCCCCGGGTACAGCTTCTGCCAAATATGCCACATAGGCTCATACAAGAAAAACACATCTGGGTTTTGGTTGAAAAGCTCCCCAAAAAAAGACGAGCCGGACCTCCAAGTGGTCAACACGTACACCAGCTGCCTTTTCTTGACCTGCGGTGCTTTGTAAAGGTAACGGATGTCTGATCTGCTTTGGAAGTTCACTCCCTGCACTGGCTGGTTGCATTGCTGAGGCTCTTTGGTCCATTTGTAATTAGCCAGGTTCAGCATGGTCAGAGCCACCAGCAGAAAATAGGCCAGAAACATGATTATCTTCTTCCGCCGTAGCACTTTCATCACAATTCCAGGGTTGGCTATTATTTTGGTGTGACTTCTTGTGCAAGATTTGTGTTTCCTTCCAAAGCCAGCATTCTTCTCCCATGGTGGTGTGAATTTTAGAGGGTAGGGTTTGTTTTTCATTTATGACACAGAAGAACCAGTAATGTCCCAAATAGAGCTGCAGTGTATCACATGCAGCAATGATGGCATAGAAGAAAGCGTGACATCTGCCCCAAGTCCATGTAATCGATTATCGATTAGGTGATGCGTGGGAGAGGAGGGGATGCCCGATGCTCCAAAATATGAGACGAAACGAAAACAAACCGCACCGCAATGCGCAGCGTTTCATTCGGATACCATACAACGGTTCGTATTATTTAACGGCTCACAAAGCGAACTCAATCACATTTCGTTTTGCTTACCGATGAAAAGCTACGGACTCATCCCGATAACATTTTTCGTCCGGGCCACCGGCTGGGGTAAAATGGCGATAAAGATGCCTGCGCGATCATTTGAGCTCAAAGGAAAGAAAACCCTGTAAGCACAAAGTTTCTTTAAAACACGAAATCAAAAGAAAGGCATCTCCCAATGTGGTACCCAGCCTCTGCTCTGTTGTCCGGCCGTACGCTATATAACCGAT
>TU27372
GAAGAGAGCTAAATTAAAACCTGCCCGATGTGTCTTAAGAATGCAGTACTACTGGCCACATTCCAGTCAGTGCACAGCAAAGAATATTATTCTATCAACCTTGTATTGATAACAAAAAATTTGCATTTAAAAAAAGGGAAATTCAGACATCTTGTATGGTGTTAAAAGTGGAAATGAAAGAAAACGTAGGTGGAAGCGAGTTGCTCTCAAACCCTCTTACTGTAATGTGAACCACGTTAATATACAGTGATTGGGTCATTCCTGTTATGCAGTACCTTTGAAGCTCTATAACATGTAAGAATTTCTATTAAAGGGTGTAGAAGATTTTTAGAAATATTTTCAGGTCAAGCTCAAGCACCTAAAATTTTATTGTAATTTGCATAACAGGATGGAAATGAAGAGCTTAAGTTAGCCATTGCTCAGAGAGACTGACTGTGAGTTAGCTTACACAAGAGCATCAACTTGAGCCATCTTTAAAAGTATTGATATTACAATTTCTGTAATTTTATCACTCAAGATGGAATGTTGAGTGAAATAAACTGAATTATAACACAATACCAACATCACAGAATTCATCAAATACACTGCTAGCGATGTTGTTGTTTTCCTGCTCAAAACTGTCATTTCATAGGATGATGTCATTAAGGAACTGGCTTTTGTTAAAGTGATATTACAAGATAAAACAGGATAGACGGTGATAGAAAGACAGACAGATAGACAAACATAGATAGAAAGATGACCTTATTCTACATTCTTAATCCTACCCAATAATACCTAAACTTAACAACTAACTTACTAACTATTAATAAGCAGTAAATTAGGAGTTTATTGAGGGGAAAGTCGTAGTTAATAGTGAATACATGTTCCCTACTAAAGTGTTACCAAAGATAGATAGATAGATAGATAGATAGATAGATAGAGAACATTTTTTTCAAAACATTTCAGTTACAGAAAGGAAAAAAAGAAACATATGGAATAGTTCTGGAAAGTTCTGCCATCGTTTATTCCCCCTCATGTTGTTCTAAACATGACTTTCTTCTGTGGAAAACTGTATTACTTTCTTTCAGACTTTTTCTTTTTGAAAAGTGTTTAAACTATTTTTGACTATAGCAAAAGTATTTGGGATCGAAAATTAATTAAGAATTAAAAACCAATAGAAAATTGTGTTTCATGATGGGGACATGAAAATGTACTGCATAACAAGAATGATATGTTTTAGTGTGTTAACCCAGAGACAAAGTCTACAGTAACTAGAGCACATCTCAATGATTCGATCAGAACTGCACCCATCTGAATTAGACACACAGGACAGTGAGTCTATTGCTATTTACATAACCTCTTTAGTTTGTGCAGTGCTGAAAGCAGTAAATGCAAAATCTAAATGTTTTGATTAAATAAATATCTTGGCGTACCTTTAATAATCAATGACACGTCATTCACAAAGTTTTTTTCTTTTTTTTTCTTTCTTATTTGCTCAAACAGATACATTCCACTGAGCCATTAAGCGTTGAACATAAATAACAGTTTGTACAGAATGAGGAGTATCAGGCTGTTATCAGCACAAATGCAAAACATAGAACGTCTTTGGCGGTGATTCATATTTTGGGTACTGTCAATAGCGGTCTGCTCAAATCCTTAGCCTCACCGGCTGTACGAACGCGCAGGTATCCCAGCAGAGACATCGCGTGCTGACAATACTCCTCCACCTGTCTGATCTGCTGGTAGTTCAGCACAGTTCTCCAGGCGCTGGCCGCTTGTGTCGCGTTCCTGGAGGATACGATGAAGGGTTTGGTGGAGGCGTTTGGTCCTGTTGTCATATTCATAGCAAAGATCTCAATTTCGTGATTGGCTGAAAGATTAACAAAGCGATAAACATTCCGAACAGTTTTTATGGGGTTCTCCACCAAGTCCTCGTAGCGTACCGTCATGTATTTGCCTTTGAACCAGTTGGGAGGGTAAAGAGCAGTTTTCAGAGTTCTAGACATCTGTTCACAGATCACCTCCATGGCTCCGATGGAGTGGTAGTCTGAACCGTCTTTTTTGTTCATTTTGTGGTTGGGGTCCACAAATGGCACACGACGAAGTTTGGGGTCTCTGCTGCGTACGACTTGCAAATTCTCCCGAATGAGTCCATGTCTAGATTTAATCCTGGAGTTGGCCACCGCCCTGGGGTCTCGAACCAGGTGGATCACTTTCAGATTCAGAGACGGGTCCTCCATTAGAGGAGCCAGAATGTTAACGTCCAAAATGCGAACTCCCTTTATCACTATCGTGTTGTATTTTAAACACTCTTCCTCCAGCATCTGAAGGCTCTGTGGAGGGCACTTTTTACAAACCTTTTCATCCACCATTCCCACCACATCTTTCCTGTAAGACGAACAGAAGGGGTAGGAGCAGATGACCTTATTTATGGCAGCCCCAAACAGTCCAAGAGAGGTTATGTTCTTCCCCCCAGGACTGTTGTACAACTGAAAAACTGAGAAATCACACCTGTAAAGAGAACTCAGCATGTCCCTGGCTGCTCCTTGGAGGGACACCGCATCCCCCGGGTACAGCTTCTGCCAAATATGCCACATAGGCTCATACAAGAAAAACACATCTGGGTTTTGGTTGAAAAGCTCCCCAAAAAAAGACGAGCCGGACCTCCAAGTGGTCAACACGTACACCAGCTGCCTTTTCTTGACCTGCGGTGCTTTGTAAAGGTAACGGATGTCTGATCTGCTTTGGAAGTTCACTCCCTGCACTGGCTGGTTGCATTGCTGAGGCTCTTTGGTCCATTTGTAATTAGCCAGGTTCAGCATGGTCAGAGCCACCAGCAGAAAATAGGCCAGAAACATGATTATCTTCTTCCGCCGTAGCACTTTCATCACAATTCCAGGGTTGGCTATTATTTTGGTGTGACTTCTTGTGCAAGATTTGTGTTTCCTTCCAAAGCCAGCATTCTTCTCCCATGGTGGTGTGAATTTTAGAGGGTAGGGTTTGTTTTTCATTTATGACACAGAAGAACCAGTAATGTCCCAAATAGAGCTGCAGTGTATCACATGCAGCAATGATGGCATAGAAGAAAGCGTGACATCTGCCCCAAGTCCATGTAATCGATTATCGATTAGGTGATGCGTGGGAGAGGAGGGGATGCCCGATGCTCCAAAATATGAGACGAAACGAAAACAAACCGCACCGCAATGCGCAGCGTTTCATTCGGATACCATACAACGGTTCGTATTATTTAACGGCTCACAAAGCGAACTCAATCACATTTCGTTTTGCTTACCGATGAAAAGCTACGGACTCATCCCGATAACATTTTTCGTCCGGGCCACCGGCTGGGGTAAAATGGCGATAAAGATGCCTGCGCGATCATTTGAGCTCAAAGGAAAGAAAACCCTGTAAGCACAAAGTTTCTTTAAAACACGAAATCAAAAGAAAGGCATCTCCCAATGTGGTACCCAGCCTCTGCTCTGTTGTCCGGCCGTACGCTATATAACCGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU27374 False 2743 lncRNA 0.40 4 83666 92290
TU27372 True 3489 lncRNA 0.41 3 88708 92290

Neighbor

gene id symbol gene type direction distance location
CI01000004_00098017_00119297 PLS1 coding downstream 5727 98017 ~ 119618 (+)
CI01000004_00150251_00175611 EPHB3, EPHB3A coding downstream 57961 150251 ~ 176659 (+)
CI01000004_00226186_00234811 NA coding downstream 133896 226186 ~ 236052 (+)
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding downstream 173801 266091 ~ 278846 (+)
CI01000004_00291677_00292816 NA coding downstream 199052 291342 ~ 292826 (+)
G24229 NA non-coding upstream 47903 26184 ~ 35763 (+)
G24279 NA non-coding downstream 25622 117912 ~ 124498 (+)
G24339 NA non-coding downstream 193577 285867 ~ 286078 (+)
G24293 NA non-coding downstream 247845 340135 ~ 344681 (+)
G24347 NA non-coding downstream 263812 356102 ~ 356397 (+)
G24292 NA non-coding downstream 284820 377110 ~ 378111 (+)
CI01000004_00467911_00469949 AGRP2 other downstream 375553 467802 ~ 471846 (+)
CI01000004_01332533_01345585 SCP2 other downstream 1240175 1331583 ~ 1346008 (+)
G25187 NA other downstream 1512252 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1771869 1867166 ~ 1868986 (+)
G25329 NA other downstream 1990767 2083057 ~ 2085707 (+)

Expression


Co-expression Network