G24293


Basic Information

Item Value
gene id G24293
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 340135 ~ 344681 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU27421
GGGTGTGTGCAGTCTCTCTATTCATGGAAACCCATGAGACAGACAATTCTATCAACGCCCTCATACAGCCTATAAACCTGAAGAGTCACTGAACGTTTATCCATACACATTTTTCCAAAAGGATCATTTGCAGAACCAAGGAGAAAATGTTCCACTTCATCCTGTTTGTTGGATTTCTGTGTTTTTCTGTGGGAGAATCGAGCACTACTGGTGCTCCTTCGACCACGGAATTGACAGCAGAAACAACATCAGCAAGCTGGATAATGACTTCTGCGCCATCAACACAGCAGCCTGGCCCAATAATTACTGGCTTGAGGATAGCTGTCAAATCTTTGGTTGATCTGTCCACTAGTTCATCTGAGATGGAGCTCCTTGTGCGTCAGATCGAAACTTTCATTCCTTCTCAATACAGAGCAACGACTTCCATCACAGTGAGAAAAATCGAGAGAGGCTCCAGAATTTGAACAATGAATACATTTGGACAATGCATTTCTCAGATACTATCATATTAGTAACGAGATTTTTCTTTTATTCATTTTCGTTTTTTTTTTTTTTTTTTTTACATTGTTGTGGGTGGTAACTTGTGGGTTGCTAGGTGGTTGTTTACTGGCCAAATCAAAAGCCAACCTGCAAGTCTCTTATAAACCTGCCTCCTATACTGAAAGCATGGTTTTGGATATTTTAGTGGAGAGACACGTTTCCTGAACCCGATGCACCTTATGATCATGTTGTAAATTATCAAGTAAAATTACAATGACAATGGAAAAAAATCAAACAAAACAATGCTTTAAAAACAAACCTGTTTTTATGGTTTATTTGCCTTTAAAACAATAATGCATTTTGCTTTCAAACATTGTAATCTTGTCAAGCATTAGTAACAGTGAATAGCTATATAACTGTATGTGAGATTGCAAAAATACTAAAAGCTACACTTAGAGAATAAAGAGCAATTCATAAATGTTTCGTGGTCTTTGTCAGTGTATTAAATCATATCAAAGACCAACAGATCTCATCAGTAGATGGTGCAGTTGGCAGTCGAGTACTCCAGACAAATCCATTCATTTGTGTACTCCTTATAGCCCTCAGCATCCACCAGCCCGCTGCCTGCAAATGCACACAAAAGAGGACGCAATGGTTTCTCTGCATGACTGGACAAGAAAAAGCAATATTTTATCAAAGCCATCATAGCATGTAGCACAGTCACATGGCAGATGTGAAACATTCTCACCCTCAACGAGATTGTAGAGGGTGCAGTAGGTTGTGCCGTTGTCTTCCAGCTTGGCCCATGCTTTTGAGATGGAATATCCCTGTGGCAGTGGCAAAAAGGAGAAAAAAGAAGCCAAAAGTATGAAAATCCTTGAAAAGGAATAGTTACTTTGTGCTTCAACAGTTTTCAAAAGAGATAACAGTGGTAACATCAACATTTTAGGTAATGTAGAATACAGATTCAGTAGGGGAGCATGGGGTGAGATGAACATGTGGGTAAGTTGACACACACCTTTTATCTAGGTAACTATTTTTGTCATAAGTAGGAAGTATCCATTTCTAGCTAATTGTGAGAAAGAGATTCACAAATTTTGTGTAAAAACAACATTCAAATGTTTGTGGGTTTTTTTTTTTTTTTTTTTTTTTAAACCATCCAAAGCCTTTGTTTAAAAAAGTCTGGGAACAGTAAGTGTGTAACTTTTTCTTTTTAATGAAATTATAACACATTTCCCTGATGTAGTAACAATAAAATTATACACTTCATTTGGGATTTTAGGTCATTTAGCTCTTTTTTTTAGATCTTATATAGGCCTATGTGTAAATGTCTATAATTTTCACCATTATTTGTATAGGCAATTATGCAAACTTCTGCTTTCACACCATGTTGTAATTACCATAATTAAGAGATGACAACACGTCCTCGTAATTACGGCAACACTATCAACGGCAATATGATTCTGAGATCTATAAGGACGTGAATGCTTTTTATAAGTCAGAATCTTGTAATTACCGTAACTAGTTTGACCTACAACAGGCTACAACCTGTACCACATGACCCCTGTGCAAGAGAAACAAATAAGTCTGAATCCGAGGATGTGAACAGCTCCAAGTACAGCGTCATGTGTTGTCGTCTCTTATTTAATTAAGGTAATTATGGCATACTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU27421 True 2151 lncRNA 0.39 4 340135 344681

Neighbor

gene id symbol gene type direction distance location
CI01000004_00318181_00339002 CCDC39 coding upstream 115 317234 ~ 340020 (+)
CI01000004_00311036_00314134 DCUN1D1, DCNL1 coding upstream 26001 309804 ~ 314134 (+)
CI01000004_00291677_00292816 NA coding upstream 47309 291342 ~ 292826 (+)
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding upstream 61289 266091 ~ 278846 (+)
CI01000004_00226186_00234811 NA coding upstream 104083 226186 ~ 236052 (+)
CI01000004_00407881_00409797 NA coding downstream 63200 407881 ~ 410139 (+)
CI01000004_00467911_00469949 AGRP2 coding downstream 123121 467802 ~ 471846 (+)
CI01000004_00544278_00547753 NA coding downstream 198252 542933 ~ 547983 (+)
CI01000004_00584081_00605137 RC3H1, RC3H1B coding downstream 239400 584081 ~ 605802 (+)
CI01000004_00617015_00621040 EXTL2 coding downstream 272334 617015 ~ 621258 (+)
G24339 NA non-coding upstream 54057 285867 ~ 286078 (+)
G24279 NA non-coding upstream 215637 117912 ~ 124498 (+)
G24251 NA non-coding upstream 247845 83666 ~ 92290 (+)
G24229 NA non-coding upstream 304372 26184 ~ 35763 (+)
G24347 NA non-coding downstream 11421 356102 ~ 356397 (+)
G24292 NA non-coding downstream 32429 377110 ~ 378111 (+)
G24358 NA non-coding downstream 79590 424271 ~ 424487 (+)
G24359 NA non-coding downstream 82028 426709 ~ 426910 (+)
G24426 NA non-coding downstream 164201 508882 ~ 511729 (+)
CI01000004_01332533_01345585 SCP2 other downstream 987784 1331583 ~ 1346008 (+)
G25187 NA other downstream 1259861 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1519478 1867166 ~ 1868986 (+)
G25329 NA other downstream 1738376 2083057 ~ 2085707 (+)

Expression


Co-expression Network