G25337


Basic Information

Item Value
gene id G25337
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1945926 ~ 1950133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28572
ACCTTCATATCTGTTAATAATACGGAGTGCGAAACTGAGGGATTGTATAAGGATTGCTTCGTTTCTGAGGTTCGATTGCCAGTATTGGAAGACAGATGTATGGTGTGCTGTGGCACTCTAATCTTCGTCATCCTCCTCGTCTTCGCTGATGGCCTGTCTGCGGGCGGCATAGGTGTAGCCGGGCAGGGCGCTGCTGTGATGTGAGGAGGGGGAGGAGGGTGGGGAGGTCTTGGTGAAGAAGGGCAGACGGAAGGTTGGAGAAGGGGAACGCTCACGTGTGGGACTGCTGTTGGGACTGTGCCTCGGACTGATGGCCTGAAGCATTCGACCTTTCCCTTCCTTTAGCATGTGTTTCAAAGCTCCCTCTGGTCCAAACATCTGCAGGAAGTTGCCAATGAACTCACGGGACTTCTCTTCCCATTTCTGGATCAGGTCGATGCTCTTCTCCTCCACCTTCTGCACAAACTCTTTACTCTTCTCCTCTACGTCCTTCACCTTCTTCTTCACCTTGTCCACGCGCTCCTGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28572 True 527 lncRNA 0.51 2 1945926 1950133

Neighbor

gene id symbol gene type direction distance location
CI01000004_01937296_01943730 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding upstream 2196 1937296 ~ 1943730 (+)
CI01000004_01917089_01920203 NA coding upstream 25221 1915626 ~ 1920705 (+)
CI01000004_01883020_01908403 ABI1B, ABI1 coding upstream 37292 1883020 ~ 1908634 (+)
CI01000004_01867166_01868986 C7H1ORF21 coding upstream 76940 1867166 ~ 1868986 (+)
CI01000004_01855598_01856473 IMP3.L, IMP3 coding upstream 89402 1855351 ~ 1856524 (+)
CI01000004_01961480_01979407 DVL3A coding downstream 9922 1960055 ~ 1979465 (+)
CI01000004_01999847_02001406 NA coding downstream 49714 1999847 ~ 2002779 (+)
CI01000004_02004004_02012588 NA coding downstream 52738 2002871 ~ 2013414 (+)
CI01000004_02014703_02018248 NA coding downstream 64467 2014600 ~ 2018466 (+)
CI01000004_02033826_02057420 TSC22D2 coding downstream 82870 2033003 ~ 2057653 (+)
G25254 NA non-coding upstream 175222 1770395 ~ 1770704 (+)
G25253 NA non-coding upstream 175749 1769825 ~ 1770177 (+)
G25248 NA non-coding upstream 183663 1760530 ~ 1762263 (+)
CI01000004_01757017_01757201 NA non-coding upstream 186704 1756990 ~ 1757864 (+)
G25242 NA non-coding upstream 241368 1704257 ~ 1704558 (+)
G25344 NA non-coding downstream 5252 1955385 ~ 1955605 (+)
G25345 NA non-coding downstream 6009 1956142 ~ 1956492 (+)
G25324 NA non-coding downstream 6509 1956642 ~ 1957261 (+)
G25297 NA non-coding downstream 28597 1978730 ~ 2027792 (+)
G25187 NA other upstream 329456 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 597752 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1474080 467802 ~ 471846 (+)
G25329 NA other downstream 132924 2083057 ~ 2085707 (+)
G25882 NA other downstream 597942 2548075 ~ 2573049 (+)
G25992 NA other downstream 786403 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 808323 2745885 ~ 2769135 (+)
G26245 NA other downstream 1558884 3509017 ~ 3522393 (+)

Expression


Co-expression Network