G25983


Basic Information

Item Value
gene id G25983
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2804151 ~ 2810327 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU29320
CCGCTGCTCTGTAAAATCGTCGTCCTTGTCCGCCACACTCTTTCTCGGCTCACAATGTCTCTGGTCACGTCTACTTCTGCATCCACAAAGCTTCTCTGTTTCTGGGTGATGTCATCGTCCAGGTCAGGCTTGATAGTAGAGCGCTTCTTGGCCATGATTTTAGCTTTGATAGCAGCGATCTTCTCCACAGACATGGCTTCTGACAGAGATCTGATCCGTCTGCACAATGCTTTCCTTATGACCCTCGAGACGAGCCGCCAGACGCTCCTTATCCAGTCGCACACGCTCTTCATCCTCAACCCTAGGTTTTTTTGCCTCTGACGACACTTCATCTGCTGCCCTTTTAACTTGTGTCGGCCTTTGTAGACCAATCTCAATGGGCGCACTTCTGTCAATACTCGTCGATGATGAGCTTTCTCCATTGAGATAGGACAGCAAGTCTTTTCTGTCGGGTCGTCTTACAACAGGGATGTTCTCTGTTGCAGCTCTCCGCACATAGGACGGGTGAGGAAGATGCACATTGTTGAGCAGAAAAAGAATGGAGTCAAGAGTGTAATACTCTTTAGGCTGTCCCTCTTTTCCAGTTCCCCAAATGACATAGTTGGTCTTGACATTTTTTGGCCAGGAGAATTCTCCGAAAATAACTTCATCTCCTTTCGCAACGATCTCTTTTTTCTGGATATTGTACTGGCGAAGAACACTCAACACGTCCGCCATGATCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU29320 True 723 lncRNA 0.37 7 2804151 2810327

Neighbor

gene id symbol gene type direction distance location
CI01000004_02745885_02768971 NA coding upstream 35016 2745885 ~ 2769135 (+)
CI01000004_02671199_02727898 GPR158B coding upstream 75823 2671199 ~ 2728328 (+)
CI01000004_02528689_02568243 NA coding upstream 234924 2528689 ~ 2569227 (+)
CI01000004_02143355_02186281 BCL2B coding upstream 617380 2142676 ~ 2186771 (+)
CI01000004_02126757_02136937 KDSR coding upstream 666803 2126466 ~ 2137348 (+)
CI01000004_02865415_02867952 NA coding downstream 54526 2864853 ~ 2868369 (+)
CI01000004_02903759_02904287 NA coding downstream 93432 2903759 ~ 2904324 (+)
CI01000004_02906581_02908320 IMPAD1 coding downstream 96152 2906479 ~ 2908320 (+)
CI01000004_02948465_02951235 PENKA coding downstream 136889 2947216 ~ 2951743 (+)
CI01000004_02955707_02959931 SDR16C5A coding downstream 145203 2955530 ~ 2959931 (+)
G25986 NA non-coding upstream 24969 2777754 ~ 2779182 (+)
G25982 NA non-coding upstream 26896 2776369 ~ 2777255 (+)
G26017 NA non-coding upstream 28170 2775570 ~ 2775981 (+)
G26015 NA non-coding upstream 29591 2774305 ~ 2774560 (+)
G26014 NA non-coding upstream 32273 2771641 ~ 2771878 (+)
G26041 NA non-coding downstream 18736 2829063 ~ 2829269 (+)
G26042 NA non-coding downstream 21322 2831649 ~ 2832043 (+)
G26046 NA non-coding downstream 42471 2852798 ~ 2858925 (+)
G26048 NA non-coding downstream 50104 2860431 ~ 2862594 (+)
G26086 NA non-coding downstream 111390 2921717 ~ 2921971 (+)
G25992 NA other upstream 67383 2736536 ~ 2736768 (+)
G25882 NA other upstream 231102 2548075 ~ 2573049 (+)
G25329 NA other upstream 718444 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 930793 1867166 ~ 1868986 (+)
G26245 NA other downstream 698690 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 740721 3550329 ~ 3553423 (+)
G27805 NA other downstream 2562498 5372825 ~ 5373803 (+)
G28165 NA other downstream 2922262 5732589 ~ 5733001 (+)
G28302 NA other downstream 3659701 6470028 ~ 6502087 (+)

Expression


Co-expression Network