G63254 (LOC106565120)


Basic Information

Item Value
gene id G63254
gene name LOC106565120
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11821284 ~ 11823244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93660
AGCatatttaggattttttttaaaaggacattAGGAAAGACACAAACAAGAGATTTGGATCAACGCCACATTTATTGTAGAAAATTGGAGGAACAAGTCTCTAATAGAGGCGCTGTGGCTTTCCCATGGTGCTCTTGATGTAGAGCGCTCTGACGTTCTGCCAGTTCTTCTTCAGCAGAGACACCAGGAAGTTAACAGCCAGGTGGATGTTGTAGACCAGCTCTTCCTCGGTCATCCTGACGTGACCAACAGCAACAGCCAGACACAAACCTTCTTCATCTGGAATTTGATGGTGGATTTGACTTCATCCACCTTGGTGCCCAGGTTCTCGTTATGAGTGAGCAGAGAGGGGAACTTTCCTGCTTTGTTGAGGCCAGGTCCCAGGATACGAGGAATCTGCTTGATCAGAGACTCTGAAGCCAGGAAAGCATCATACTTCTTTgcCCAGCTTCTTGACCAGTTTCTTGTTCTTGTTGAGCTTTTTAAGAGCCTCGATGTCCATGTGTGGAAGCTCAGCGGCCTTGGCTTCATCACAATGCTGCTGGTCACCAAGGACGCACACGGAGAACTTGGGACGTGGGGTGGTCTTCAGCCTGTGAGGGGCAATGGAAGACAATGACTGACAAATAGAAGCATATCGGACCCCTTTTGACCTACGTTGAGGCAGAACTGAAGAGTCTTACCCATACCACCTCAGCTGGAACCAGGTGTTGATAGCACAGGCATATAATAAAATGGTCGGCTTAGGTATGACGGCGTGAACGCCGTCACCTATAGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGCCTGCTTCACCAAGCCAGAGAAGGGATGGTTCAGACAGACTACCCGAGACTGTTCTACACTGCCTGCCTTTAAGCTGCCGGCTTATGCAATTTAACCAAATAACTACCATGTCAGAATATCCAGATATTTATTAATGCAGAACAAAGGTCAGGCAGACAGAAGGCTGGGTGATACAGTAAAGGGTCGAACCTGACAGTGCCTGAGAAACGCTTGTCCTTCTGGGGATCGTAGTTCTTCAAGCTGATCTGCAGCTCCACAGTCTCAAGAAACCTTAAACATAAAATGGCAAGTTAAGCATGAAGTATCAATCATTTTCTACACAATACAATTGACACGCACAACTGAAATACTtgcaaacaaattaaaagtccTATAGACAGATACAATAAAAGTTCATACTACAATCTTGTGCCGTGacctaataaaaacacactatGACCAGACTCACTTTCTTTTCTTAAGACGGGCACCTGCCTGGACCTCCCGAACAGCCTCGTACAAAGTGTCTCTTGAGACCTTGCTGttaccaaataaaaacacattaaattattattcccATGGCTACAATATATTCTGAGTGCATACTGACGGACCGGTGAATGCATTACTAACATGCCTCTAAACTCAGTTTCCTAAACctcaatatacatttattacgtAAGTTAGACTTGAATAATAACCATCAGAACAGTTATAACTTCAGATGAAATTAAATACTTGTCAGATTAAACCGGATTGCTTTCCAGATGAGCCGGTGCGCTGCGAGATAGCGCTCAAGACCTGCTCGAGATTATCAAGGAAAACAAATCTAAAGCTCTCCGACTGATTTTACTTGCTTGATATATTTACTTGTATAGCTATTAAACGGCTAAATAAAACGTCATAAAGCACTAAATACTTCATATATGGACAATTCTCACGTGCCTCATTTTGCCG
>TU93661
AGCatatttaggattttttttaaaaggacattAGGAAAGACACAAACAAGAGATTTGGATCAACGCCACATTTATTGTAGAAAATTGGAGGAACAAGTCTCTAATAGAGGCGCTGTGGCTTTCCCATGGTGCTCTTGATGTAGAGCGCTCTGACGTTCTGCCAGTTCTTCTTCAGCAGAGACACCAGGAAGTTAACAGCCAGGTGGATGTTGTAGACCAGCTCTTCCTCGGTCATCCTGACGTGACCAACAGCAACAGCCAGACACAAAACTTCTTCATCTGGAATTTGATGGTGGATTTGACTTCATCCACCTTGGTGCCCAGGTTCTCGTTATGAGTGAGCAGAGAGGGGAACTTTCCTGCTTTGTTGAGGCCAGGTCCCAGGATACGAGGAATCTGCTTGATCAGAGACTCTGAAGCCAGGAAAGCATCATACTTCTTTgctaaaaagcagcaaaaaagaTGCATCAATAGGTAGAATAAACCCAGAACAAACTACAGAACCAAACACGTACATGTCTGATCGCTAATGTTCTTTCATAAGGAAACTCACCCAGCTTCTTGACCAGTTTCTTGTTCTTGTTGAGCTTTTTAAGAGCCTCGATGTCCATGTGTGGAAGCTCAGCGGCCTTGGCTTCATCACAATGCTGCTGGTCACCAAGGACGCACACGGAGAACTTGGGACGTGGGGTGGTCTTCAGCCTGTGAGGGGCAATGGAAGACAATGACTGACAAATAGAAGCATATCGGACCCCTTTTGACCTACGTTGAGGCAGAACTGAAGAGTCTTACCCATACCACCTCAGCTGGAACCAGGTGTTGATAGCACAGGCATATAATAAAATGGTCGGCTTAGGTATGACGGCGTGAACGCCGTCACCTATAGCCTCCCCTCATGTTTTAAGACCCAGGGTAGGGGTCCGCCTGCTTCACCAAGCCAGAGAAGGGATGGTTCAGACAGACTACCCGAGACTGTTCTACACTGCCTGCCTTTAAGCTGCCGGCTTATGCAATTTAACCAAATAACTACCATGTCAGAATATCCAGATATTTATTAATGCAGAACAAAGGTCAGGCAGACAGAAGGCTGGGTGATACAGTAAAGGGTCGAACCTGACAGTGCCTGAGAAACGCTTGTCCTTCTGGGGATCGTAGTTCTTCAAGCTGATCTGCAGCTCCACAGTCTCAAGAAAACTTTCTTTTCTTAAGACGGGCACCTGCCTGGACCTCCCGAACAGCCTCGTACAAAGTGTCTCTTGAGACCTTGCTGttaccaaataaaaacacattaaattattattcccATGGCTACAATATATTCTGAGTGCATACTGACGGACCGGTGAATGCATTACTAACATGCCTCTAAACTCAGTTTCCTAAACctcaatatacatttattacgtAAGTTAGACTTGAATAATAACCATCAGAACAGTTATAACTTCAGATGAAATTAAATACTTGTCAGATTAAACCGGATTGCTTTCCAGATGAGCCGGTGCGCTGCGAGATAGCGCTCAAGACCTGCTCGAGATTATCAAGGAAAACAAATCTAAAGCTCTCCGACTGATTTTACTTGCTTGATATATTTACTTGTATAGCTATTAAACGGCTAAATAAAACGTCATAAAGCACTAAATACTTCATATATGGACAATTCTCACGTGCCTCATTTTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93660 True 1751 lncRNA 0.44 3 11821284 11823244
TU93661 False 1683 lncRNA 0.44 3 11821284 11823244

Neighbor

gene id symbol gene type direction distance location
LOC122350200 LOC107731172,LOC107668058,LOC107549973 coding downstream 19630 11797768 ~ 11801654 (-)
trnaf-gaa_1 NA coding downstream 24082 11797130 ~ 11797202 (-)
slc38a5b slc38a5b,slc38a5,LOC107668060,LOC107549975,LOC107731265,LOC107745748,LOC107678718,LOC107549617 coding downstream 56634 11749596 ~ 11764650 (-)
wasb LOC107731288,LOC107668059,LOC107745750,LOC107549977,LOC107678704,LOC107549603 coding downstream 73403 11743139 ~ 11747881 (-)
gpr173 gpr173,LOC107731146,LOC107678674,LOC107549585,LOC107549979,LOC107745752 coding downstream 137659 11675274 ~ 11683625 (-)
inavaa si:ch211-163l21.4,LOC107731290,LOC107745811,LOC107678807,LOC107667997 coding upstream 4878 11828122 ~ 11837390 (-)
zgc:195245 zgc:195245,LOC107668117,LOC107549966,LOC107731284 coding upstream 15049 11838293 ~ 11840601 (-)
c8h1orf194 LOC107731283,LOC107668109,LOC107549965 coding upstream 17937 11841181 ~ 11842852 (-)
lhfpl5b lhfpl5b,LOC107591869,LOC107745833,LOC107731128 coding upstream 60494 11883738 ~ 11891283 (-)
dclre1b LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930 coding upstream 147497 11970741 ~ 11974829 (-)
G63134 si:dkey-16n15.6,LOC107667993,LOC107549944,LOC108442380,LOC105898899 non-coding downstream 153804 11667166 ~ 11667480 (-)
G63127 NA non-coding downstream 156510 11663435 ~ 11664774 (-)
G63120 NA non-coding downstream 169380 11648509 ~ 11651904 (-)
LOC122350252 NA non-coding downstream 200079 11620447 ~ 11621205 (-)
G63076 NA non-coding downstream 259651 11560987 ~ 11561633 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding upstream 32501 11855745 ~ 11856062 (-)
G63344 NA non-coding upstream 193482 12016726 ~ 12017351 (-)
G63347 NA non-coding upstream 196467 12019711 ~ 12019953 (-)
G63350 NA non-coding upstream 199271 12022515 ~ 12022753 (-)
G63321 NA non-coding upstream 281334 12104578 ~ 12139398 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 42033 11778271 ~ 11779251 (-)
G63095 NA other downstream 205359 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 475296 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 651811 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 690046 11096140 ~ 11131238 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 228113 12051357 ~ 12054530 (-)
G63385 NA other upstream 440450 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 518916 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 665953 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 1162410 12985654 ~ 13083372 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location