pola2 (pola2,LOC107599808,LOC107657899)


Basic Information

Item Value
gene id pola2
gene name pola2,LOC107599808,LOC107657899
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8652304 ~ 8657286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246672.1
AAATCAGCTCCCTCTGGCGTTCTGGGGGACGCGTGGCGGAACCGGAAGTGACCTTTCAGTGCTGTTTTGCGGGTTCTTTTTCGCGGCAATCCGAACGCGATGCAAAGACTGAGGAATATGACagctgatttttatttcaaaatataagATTCTTCGTGTTTAAACATCAGTGGACACAATAACAATGGCATCAGTCACTGCAGAGGACATCAAATCTGAACTGGACACTTTCTACATCGCCTTCAACGATGACACAGTGGATAAAATGTTGGAACAGTGTTTGTGCCACAGGCTGAAGGGGGAAGAGATTGTGTGTGAGTGGTTTGCTTTCAGCTCCAGTAGAGGCCAGCTACCTCTCACTCTTGATAATCTGGACCAGTTTGAACATGAAatactgaagaagaaaaagcctAAAGGCTCATCAAAGGGAAGCCAGTTTAACAAGACAAGAGACATAAACTCTATCCAGGAGCTAATCCGagcagaagaggaagaggagagctTGTTAGACTCCTATTCAACACCTGCCAAAGGCTCTCAGAAGCGAGCGCTGACCACCCCAGAACATCCTCAGTCCAAGAGAGGTGTGGCTCGACTCACCAGTCCCAGTCTGTTGCTGTCACCTGCCAGCTTCTCACCAAGtgCAACCCCTTCTCAAAAGTACGGCATGCGTGGTGGGCGAGGAGAGGTGGTTTCTTCGTTTGGGGCGGTGCAGGGTCCTCGCTGGACTGGTAAAGGACAGAGTGCTGTGAGGGTCGAGATGCTAGAAGGAGAGAATTCACTCATTAGCAGCTACAAATACATGTTCCAGAGACTGAGAGATGTGCGGGACGTTTTGACCGAAAAGATTGAAGAACTCGGAGAGGAACTGCGAAGTCATTTTAACATAGAGGAATTCTCTCCGGTTTCATTACCAGTTCAGGATAGCGTCACAGTACTGGGGCAAGTGTGCTGTGATAGTAATGGCAAGCTCAATGCCCAGTCTGTGCTGCTGGAGGCCGGACAGGAACAGGGGGGCAGACAGGTTCCTGTGGATCTGTCTGAGCTCAAAGAGTTCTCTCTTTTTCCTGGACAGGTTGTTGTGATGGAAGGTATGAATCCTTCTGGAGAGAAGTTTGTTGCTACCAAACTATACGAGGGTATTCCCCTGCCTTTTTACTGTCCTTCTGAAGTGAAACAAGAAATGGACGAGGtgtctgagtctgtgATGGTCATGATGGCTTGTGGACCGTTCACCCCCTCTGACAGTATGACCTATGACCCTCTGATTGACCTCATTACTATCATCAATAAAGATCGTCCTGATGTGTGCATTCTGTTTGGTCCTTTTGTCGATTCCAAACATGAGCAGATTGAGAAAAACCAGGTAACCGAAGCATTTGGAAACATCTTCAAAAGATGTGTGGACATCATAGTAGAAGGAACCAAAGGATCAGGATGCAGGTTAGTGTTTGTGCCATCTCAGAGGGATGCCcatcataattacatttatccTCAACCACCTTTCAACCTGACCAACCTCAGCAAAGATGATTCAGCGCGGGTGACCTTAGCTCCTGACCCCTGCACGCTCCTCATTGGTAATGTGACATTTGGCCTGACCTCTACAGACATTCTGTTTCATATGGGAGCCGAAGAGATCAGCAGtggCACAGGCACAGAACGTTTCTCACGGATCATGAAACACATGTTGACCCAGAGAAGCTACTATCCTCTCTATCCTCCTGCGGAGGAAGTCAACATGGATTATGACAGGTTTCAGCAGGTCTGCCAAATGAACCTCACACCTGATGTTCTTATTGTTCCTTCAGAGCTCCGGTATTTCATCAAGGATGTgattggctgtgtgtgtgtcaatccTGGTCGTCTCACTAAAGGACAGGTGGGCGGGACTTATGGAAGGATGCTCATTCAGCCAAACCCTGTGCTGATGGAGGGAAAGAGAATGAGTCCATGTATAGCAGGACAGGTGGTGAAAATATGATACAATTTACCTTTCCTCCTGCTAGAACTTTATTAAATCGtgtctgtattttttatgtctGTATTAAAACCTTTCACTTAAAGtgactggaaaataaaatactttatagaA
>XR_006251592.1
AAATCAGCTCCCTCTGGCGTTCTGGGGGACGCGTGGCGGAACCGGAAGTGACCTTTCAGTGCTGTTTTGCGGGTTCTTTTTCGCGGCAATCCGAACGCGATGCAAAGACTGAGGAATATGACagctgatttttatttcaaaatataagATTCTTCGTGTTTAAACATCAGTGGACACAATAACAATGGCATCAGTCACTGCAGAGGACATCAAATCTGAACTGGACACTTTCTACATCGCCTTCAACGATGACACAGTGGATAAAATGTTGGAACAGTGTTTGTGCCACAGGCTGAAGGGGGAAGAGATTGTGTGTGAGTGGTTTGCTTTCAGCTCCAGTAGAGGCCAGCTACCTCTCACTCTTGATAATCTGGACCAGTTTGAACATGAAatactgaagaagaaaaagcctAAAGGCTCATCAAAGGGAAGCCAGTTTAACAAGACAAGAGACATAAACTCTATCCAGGAGCTAATCCGagcagaagaggaagaggagagctTGTTAGACTCCTATTCAACACCTGCCAAAGGCTCTCAGAAGCGAGCGCTGACCACCCCAGAACATCCTCAGTCCAAGAGAGGTGTGGCTCGACTCACCAGTCCCAGTCTGTTGCTGTCACCTGCCAGCTTCTCACCAAGtgCAACCCCTTCTCAAAAGTACGGCATGCGTGGTGGGCGAGGAGAGGTGGTTTCTTCGTTTGGGGCGGTGCAGGGTCCTCGCTGGACTGGTAAAGGACAGAGTGCTGTGAGGGTCGAGATGCTAGAAGGAGAGAATTCACTCATTAGCAGCTACAAATACATGTTCCAGAGACTGAGAGATGTGCGGGACGTTTTGACCGAAAAGATTGAAGAACTCGGAGAGGAACTGCGAAGTCATTTTAACATAGAGGAATTCTCTCCGGTTTCATTACCAGTTCAGGATAGCGTCACAGTACTGGGGCAAGTGTGCTGTGATAGTAATGGCAAGCTCAATGCCCAGTCTGTGCTGCTGGAGGCCGGACAGGAACAGGGGGGCAGACAGGTTCCTGTGGATCTGTCTGAGCTCAAAGAGTTCTCTCTTTTTCCTGGACAGGTTGTTGTGATGGAAGGTATGAATCCTTCTGGAGAGAAGTTTGTTGCTACCAAACTATACGAGGGTATTCCCCTGCCTTTTTACTGTCCTTCTGAAGTGAAACAAGAAATGGACGAGGtgtctgagtctgtgATGGTCATGATGGCTTGTGGACCGTTCACCCCCTCTGACAGTATGACCTATGACCCTCTGATTGACCTCATTACTATCATCAATAAAGATCGTCCTGATGTGTGCATTCTGTTTGGTCCTTTTGTCGATTCCAAACATGAGCAGATTGAGAAAAACCAGGTAACCGAAGCATTTGGAAACATCTTCAAAAGATGTGTGGACATCATAGTAGAAGGAACCAAAGGATCAGGATGCAGGTTAGTGTTTGTGCCATCTCAGAGGGATGCCcatcataattacatttatccTCAACCACCTTTCAACCTGACCAACCTCAGCAAAGATGATTCAGCGCGGGTGACCTTAGCTCCTGACCCCTGCACGCTCCTCATTGGTAATGTGACATTTGGCCTGACCTCTACAGACATTCTGTTTCATATGGGAGCCGAAGAGATCAGCAGttttggggtttttttgcagtggCACAGGCACAGAACGTTTCTCACGGATCATGAAACACATGTTGACCCAGAGAAGCTACTATCCTCTCTATCCTCCTGCGGAGGAAGTCAACATGGATTATGACAGGTTTCAGCAGGTCTGCCAAATGAACCTCACACCTGATGTTCTTATTGTTCCTTCAGAGCTCCGGTATTTCATCAAGGATGTgattggctgtgtgtgtgtcaatccTGGTCGTCTCACTAAAGGACAGGTGGGCGGGACTTATGGAAGGATGCTCATTCAGCCAAACCCTGTGCTGATGGAGGGAAAGAGAATGAGTCCATGTATAGCAGGACAGGTGG

Function

symbol description
pola2 Predicted to enable DNA binding activity. Acts upstream of or within with a positive effect on cell population proliferation and fin regeneration. Predicted to be located in nucleus. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human POLA2 (DNA polymerase alpha 2, accessory subunit).

NR:

description
DNA polymerase alpha subunit B

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02321 POLA2; DNA polymerase alpha subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246672.1 True 2095 mRNA 0.47 19 8652304 8657286
XR_006251592.1 False 1992 transcript 0.48 19 8652426 8657286

Neighbor

gene id symbol gene type direction distance location
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 46138 8600995 ~ 8606166 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 171573 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 175757 8469042 ~ 8476547 (-)
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 185091 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 195070 8431193 ~ 8457234 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 89601 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 163070 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 265407 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 315507 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 334057 8991343 ~ 9001962 (-)
G62120 NA non-coding downstream 144181 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 222169 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 383087 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 678284 7879417 ~ 7974020 (-)
LOC122350893 NA non-coding upstream 54751 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 256196 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 261472 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 264195 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 278792 8936078 ~ 8942255 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 2321 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 235751 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 419530 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 964742 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1549311 7091450 ~ 7102993 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 599957 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1043108 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1297395 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 1338261 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1587910 10245196 ~ 10248156 (-)

Expression


Co-expression Network