XLOC_007134 (si:ch211-274f20.2)


Basic Information

Item Value
gene id XLOC_007134
gene name si:ch211-274f20.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 9009600 ~ 9028955 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014110
CGTATACTACAGTGGTAAAGAAACACGGAGAGCATTAAGGGGTTTTATTTTTCCCACCTTTCTCTGATGACAGTTTTGAGCACAGATACAGATATGATGCCTTTATTCTTTGGCTTGTGCTTGTGTTACATCAGTGGAGCGCAGAACGTTTACAGAGCAGTTTCAATACCAGACCAGGCTTATTTTGCCGAGACGTTTGATGAAGGTGCGCTGGACAGAAAATGGGTTTTGTCCAAAGCAGTGGTGAAGCATCTCCGTTATAATGGGGAGTGGGCTGTAGAAGAGTCCATTCAACCAAGGCTGTTGGGAAACAAAGGCCTGGTCCTCAAGTCTCCTGGCAGACATCATGCCATATCTGCATACTTGCGGAATATCTATCACTTTAAAGACAAACCTCTTATCTTACAGTATGAAGTTTCCTTCCAAAAGGGGATTGACTGTGGTGGAGCCTACATCAAGTTGCTTTCACAGTCAGATGACCTGCGTTTGAGCCAGTTCAGTGATGCCACTCCATACACAATTATGTTTGGTCCAGACAAATGCAGCAGCaatcacaaaatacatttcatctTTAGTCATCATAATCCCATCACAAGGACATATGAAGAAAAACATGCTCGCCAACCAGAAATGGACCTTAGTGACTATTTTACTGACCAGCAGGCGCATCTCTACACTTTGAACTTATATCCTGACAACACATTTGAGATCCTCGTTGACCTGACGCTGATTAATAAGGGCAGTCTTTTGGAAGATATGGACACACCAGTGGCGTCTTCTGACCAAAAACAAGAACATTTAACAAATGAAGCCTCTGATCTAAACTTGGAGCAACATATGAGGTCAGATGGTGTGGACAGACAAAGAAACGATTGCACTGAAGCTTCAGTTTGTGAGGGCTCTTCTCGTCCAGCAAGTTCAGGCTCTAACAATCCGAAGAACCAACCCAGCACAAACACTAATGATAAGGACAACAAAGGAAAGCAGCAGTTCACAATGAGTCCCATTGCGGCTGTGGGTTTTGAGCTTTGGTCCCTTACTGGAGATGTGATGTTTGATAATATCTTGCTTTGTGATGATCTGGAAGTAGCCAGACGGTGGACAGAAGACACATGGGGCCAGAGACAGACACCCGGAATGATTGAAAAGCTGTTGATGGCGACCGTCAAGCGGCCTTGGCTCTGGGGGGTCTATGTCTTCACCGTGGGCCTTCCCATCATCCTCTTCGTTAGCTTAATGTGGCCTGATaagCGGTTTGGACCACCAGATCAAGACTATTACTATAAAAAAACAGACGAGCCCCAGACAGATGGACCTCAGGATGTGGAGGAGCACGTCACTCATGATCACGgTGAAAATCAAAGAGTCGAAACTAAAAGCAGAGTGGTGAAGAGGGCTCCAAAAAACACAGAAGTAACAAGTTAATAGTACACTCTGTCACAGATTTCAGCAGATATTTCATCATCGACTGTCAACTGATTAAATAGTATGAAATGCTGACGTTCTCATATCAGATACTCACGGAGCCCTTGATGAATCATTCAGGTCTCATTTTATGTGGAGGAGCAGTGATTGTTTCATCACTCAACTCTCCAGTAGGtagatagaaataaaaatattctcTGAAGTGAAATGATCCTCGTTACAGAACATTAGTTATGATTTTCAATCATTATTAAAGGAGTTTTTTCCTAACCATCCGCAACAGCGACCCCTAGGGGTGTAACGTACGAACTGATCATGTCCCACAGTTTGGAATGCACGTGACCTGCggattaaaaactgttttttaaattGTAGATTCTTCCAAGAGATTGCCTGCcgcatcattcaaatcacatgtatgaaagaaTTTTggcttttttgtaaaatataatgagGTCGGAAGAAGCTGTGGTAGGACCTAAATGCTGTCTTAGgttattaaagttattttctgtc

Function

symbol description
si:ch211-274f20.2 Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane.

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-91 Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane.

Ensembl:

ensembl_id ENSDARG00000058579

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014110 True 1941 mRNA 0.43 13 9009600 9028955

Neighbor

gene id symbol gene type direction distance location
XLOC_007133 rps6kal coding upstream 7195 8940326 ~ 9002405 (+)
XLOC_007131 kcnk4a coding upstream 254403 8710568 ~ 8755197 (+)
XLOC_007132 pimr57 coding upstream 282248 8725216 ~ 8727352 (+)
XLOC_007130 si:dkeyp-115e12.6 coding upstream 307721 8638353 ~ 8701879 (+)
XLOC_007129 stx5a coding upstream 392937 8594367 ~ 8616663 (+)
XLOC_007135 CU468164.1 coding downstream 27116 9056071 ~ 9066756 (+)
XLOC_007136 CR293501.2 coding downstream 217406 9246361 ~ 9294910 (+)
XLOC_007137 msnb coding downstream 258728 9287683 ~ 9336601 (+)
XLOC_007138 hmgn6 coding downstream 392555 9421510 ~ 9428248 (+)
XLOC_007139 si:dkeyp-86f7.4 coding downstream 403672 9432627 ~ 9447115 (+)
XLOC_007118 FP245526.1 non-coding upstream 1412146 7582453 ~ 7597454 (+)
XLOC_007117 NA non-coding upstream 1476427 7524305 ~ 7533173 (+)
XLOC_007115 NA non-coding upstream 1582654 7408421 ~ 7426946 (+)
XLOC_007112 NA non-coding upstream 1756957 7250956 ~ 7252643 (+)
XLOC_007143 NA non-coding downstream 541863 9570818 ~ 9578082 (+)
XLOC_007147 NA non-coding downstream 1461843 10490798 ~ 10492241 (+)
XLOC_007152 NA non-coding downstream 1769927 10798882 ~ 10799415 (+)
XLOC_007153 CR855117.2 non-coding downstream 1787342 10816297 ~ 10816413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location