XLOC_007137 (msnb)


Basic Information

Item Value
gene id XLOC_007137
gene name msnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 9287683 ~ 9336601 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014114
ATATGACTCTGACGAGAGCAGAACTCTACAAGAAGACACTGGTCAGCTAAAAAAATACAGCCAAATGTCTATAAACGTTCGGGTCACTACAATGGATGCTGAGCTGGAGTTTGCCATTCAGTCCAGTACAACTGGTAAACAACTTTTTGACCAAGTTGTGAAAACAATTGGACTCCGAGAGATCTGGTACTTCGGACTGCAGTATCAGGACAGCAAGGGCTTCTCTACATGGCTGAAACTCAATAAGCGGGTGACTGCTCAAGACGTCAGAAAAGAAAATCCACTGCTGATTAAATTCAGAGCAAAGTTCTACCCTGAGGATGTGGCAGAAGAGCTGATTCAGGAAGCCACACAGCGCTTGTTTTTCCTCCAGGTGAAAGAAGCCATTTTGAATGATGACATCTACTGTCCACCTGAGACGGCGGTTCTGCTGGCTTCATATGCTGTGCAGATGAAGCACAGTGACTATAATAGTGAACATCACATTCCTGGATATTTGTGCAGAGACAAACTGCTGCCACAAAGAGTTCTAGAACAACACAAACTAACTAAAGAGCAATGGGAACAACGAATTCAGGTGTGGCATGAGCAACACAAGTCCATGAGCAGAGAGGACGCAATGATAGAATACCTGAAGATTTCCCAGGATCTGGAGATGTACGGAGTGAACTATTTCAgcatcaaaaacaaaaaaggatCAGAGTTGTGGTTGGGTGTTGATGCTTTGGGACTCAACATTTATGAGCGATCAGACAAGCTGACACCTAAGATTGGATTCCCCTGGAGTGAGATACGGAATATTTCTTTCAATGACAAGAAATTTGTCATTAAGCCTATAGACAAAAAGTCCCCGGACTTTGTGTTCTATGCACCTCGCCTTCGAATTAACAAGCGCATCCTGGCTTTATGCATGGGAAACCATGATCTTTACATGCGCCGCCGCAAGCCAGACACCATTGAAGTGCAGCAAATGAAAGCACAGGCCAGAGAGGAGAAGAACAAGAGGCAACAAGAGAGAGCACTTCTggaaaatgagaaaaaaagaagagaaaatgcCGAGAAAGAAACTGAGAAGATTGCAAGAGAAACAATGGAGCTCATGGAAAGACTGCGGCAAATTGAGGAACAAACCAAAAAAGCTCAAGAGGAGCTTGAAGAGCAGACCAAGCGAGCACTGGAGCTGGAACGGGAAAGGAAATTTGCTCAGGAAGAGGCAGAGAAATTGGAGAAAGACCGCAGAATTGCAGAAGATGTGAAAACAGCATTATTGCAGCAATCTGAGAACCAGACAAAGAACAAAGATAATCTGGCAACAGAGCTGGCTGAGCTGACGTCCAAAATCAATCTTCTGGAAGATGCTAAAAAGAAGAAAGAGGATGAAGCCAGGAAATGGCAGAGAAGGGCAATTATGGTTGAGGTAGACCTGGAGAAGACTAAAGAGGAGTTGAAGAGTAAGCTAATTGGGGTCCACATCCAGGCAACATCCCAGACGGAGAATGACCATGATGAGAATGATGAGAGCAGTGCCGAGGCCAGCGCTGAGCTCACATCCACTGGATCATTTCGAGATCGAAGTGAAGAGCAGCGCATAACAGAAACCGAGAAGAACGAACCTCTGCAGAAGCGTCTACAGGCTTTGAGCTCAGAGCTAGCAGATGCCCGTGATGACAGCAAGAAGACTGCAAACGATCTGATCCATGCTGAGAATGTGAGGTTAGGGAGGGACAAATACAAAACCTTGCGGCAAATCCGACAAGGAAACACCAAACAGCGCATTGATGAATTTGAATCCATGTGAATTCCCAATTTCACAGTGTCCGTCTGTTAGTTAATATACAGTTGATATCTGTGTTTGATTATctattacattttgttttcaaatcAGAGGCAGATATATTAAATTATCCTATTGTTTTGAATGTAAAATAAGGATAAATGTTGTGAACCTCTTGATTGACCTATTAAAATAGACATTGAGTTTATGTGACAATCAAATAATAAACATACAAACTTTATGTATTCGTATCCATAATGTATTTCCCCT
>TCONS_00014115
GCGGGCTCATCATTTGAATTAAATAACGGACACAAGCAACGGGCGGAACGGTAATCAAAGATAAACGTTCGGGTCACTACAATGGATGCTGAGCTGGAGTTTGCCATTCAGTCCAGTACAACTGGTAAACAACTTTTTGACCAAGTTGTGAAAACAATTGGACTCCGAGAGATCTGGTACTTCGGACTGCAGTATCAGGACAGCAAGGGCTTCTCTACATGGCTGAAACTCAATAAGCGGGTGACTGCTCAAGACGTCAGAAAAGAAAATCCACTGCTGATTAAATTCAGAGCAAAGTTCTACCCTGAGGATGTGGCAGAAGAGCTGATTCAGGAAGCCACACAGCGCTTGTTTTTCCTCCAGGTGAAAGAAGCCATTTTGAATGATGACATCTACTGTCCACCTGAGACGGCGGTTCTGCTGGCTTCATATGCTGTGCAGATGAAGCACAGTGACTATAATAGTGAACATCACATTCCTGGATATTTGTGCAGAGACAAACTGCTGCCACAAAG

Function

symbol description
msnb Predicted to enable actin binding activity. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 50. Orthologous to human MSN (moesin).

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030717-7 Predicted to enable actin binding activity. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Human ortholog(s) of this gene implicated in immunodeficiency 50. Orthologous to human MSN (moesin).

Ensembl:

ensembl_id ENSDARG00000028740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014114 False 2044 mRNA 0.43 13 9287683 9336601
TCONS_00014115 True 515 processed_transcript 0.46 4 9300529 9314289

Neighbor

gene id symbol gene type direction distance location
XLOC_007135 CU468164.1 coding upstream 220927 9056071 ~ 9066756 (+)
XLOC_007134 si:ch211-274f20.2 coding upstream 258728 9009600 ~ 9028955 (+)
XLOC_007133 rps6kal coding upstream 285278 8940326 ~ 9002405 (+)
XLOC_007131 kcnk4a coding upstream 532486 8710568 ~ 8755197 (+)
XLOC_007138 hmgn6 coding downstream 84909 9421510 ~ 9428248 (+)
XLOC_007139 si:dkeyp-86f7.4 coding downstream 96026 9432627 ~ 9447115 (+)
XLOC_007140 rell2 coding downstream 120074 9456675 ~ 9475845 (+)
XLOC_007141 st3gal5 coding downstream 144842 9481443 ~ 9499474 (+)
XLOC_007142 BX957231.1 coding downstream 160431 9497032 ~ 9535094 (+)
XLOC_007118 FP245526.1 non-coding upstream 1690229 7582453 ~ 7597454 (+)
XLOC_007117 NA non-coding upstream 1754510 7524305 ~ 7533173 (+)
XLOC_007115 NA non-coding upstream 1860737 7408421 ~ 7426946 (+)
XLOC_007113 NA non-coding upstream 2035561 7251875 ~ 7252122 (+)
XLOC_007143 NA non-coding downstream 234217 9570818 ~ 9578082 (+)
XLOC_007147 NA non-coding downstream 1154197 10490798 ~ 10492241 (+)
XLOC_007152 NA non-coding downstream 1462281 10798882 ~ 10799415 (+)
XLOC_007153 CR855117.2 non-coding downstream 1479696 10816297 ~ 10816413 (+)
XLOC_007154 NA non-coding downstream 1509859 10846460 ~ 10847557 (+)

Expression


Co-expression Network