XLOC_007169


Basic Information

Item Value
gene id XLOC_007169
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 12359510 ~ 12361690 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016140
ATAGGGGGCATGATGTACACGGGTGAAACTTGTAGTGTTAGTAGGGATTCCTAGTTGGCAAAATGATGGTGGAGTACAGTATTAGTAATTCGGCTTTGTTGTTAACTATACAGAGGCAGAATGACAATTTCAGTTTTCACTCTGTATATTTTTTCTCCCTCTGCCGCAGAAGATTGTGGAGCTGAGAGGAATACCCTTTCGACTGAAGTGCTGTATTTAAGATTGcaccatacgacagaattttgcatacacaaactctagtgtgaccacagctttgcTCCTGGATATCTGCTCCTCGTTCCTGTTGTCTCCATCATCTTCTCATTTGTGTCATGAGCCAGGTCTGATTTAATTAATTATCTCTCATTGTTTGGAGCTTTTCTTCCTTCTCAGCTGTAGATCATTTCTATTTGCAATCATTGCTATGGCACCTGCTGTCACTCGTAGCTGATTAGTGTCTGTATTTCTACCTCTGTGTTCTCGATCTCAGTGCCAGATTATTACCCTTCATGTTGTACGTTCACGTTAACCGTGCTGTGTTCACTAAATACTGTTTTCTGTAGTTTGTCTTGTCTGATTGAGTCCTGTCTTGCATGAAGTGTTATATTTTATCAGAGCTTACTTGTACTCTGCTTTGCCTAACAATCACCAACCCTAAAGTTTCTGCTAAGGATCACATTCTCACCAGCTCTCCTTATCTGCCCCCTGGCAAGCCTTCTCTGCGGGCTCAAATTGTACTCACCCTGAGCTGTCGTAAGCCTTTTTGTGCTGCTCACCAGCCGAAGTCCAGCATGCGGCAGCCTGCCTTTGTTTGactttgtgcctaataaactgtCCTTATTTTGCCCGCACCCTTGGTGTGTTGTCTTTTCATTACAGTTTGATGATCCTTCTACTCTCATCTCCTGGTGTATTTGTGTCATGGAAACACCAGACTCATCTACTCACCACCGTTCACAATATCCTGAACTCTGAGCACATGCACACCTGAGCACTATTCACCAATCATCAGCAACAGGATAAAAGCAGTCATCACTAGCACTTTGCTTGGTCTCCCTGTGGATAAGGACTAATCTCCCATGTTAATACTACTTGCCTGCATTACTGCTCCAATGTTCCAGATCTTTTTCTGTGCCTTGAGTTCTAGTGTGTCTACTTACCTGTAGTGATGTGCGATATCACCGGTTTCCTATCCGATCCGaacctttttcttttgttttatcattgtcaCAAAAACCCAAGCCACCAAAATACAGCCAAATCGCCACTTTTTGTCCCTCTGGACCTGGATAGTGCCTGCCTGATGCACCCAAGGACTCTGAAAGTCATGTCTGTCTTGCCCTTGCAGCACCTGTGCCTCTCCTTTCCCCCTCTTCTGACCACATGATGTAGTCATATTCTGTCTTGTGTTTTTTATGtaggtgtttgattaggtttgtggtAATACCACAGTATCTCACTGTTTTGTTACATGTGTCACAAACAGCATTGTTTCATTTTATGAAAGTGAAGTAGCTCCACAAAATCTTCGCTTGCGGTCACCCATATCCAATGACagagccaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016140 True 1565 lncRNA 0.43 2 12359510 12361690

Neighbor

gene id symbol gene type direction distance location
XLOC_007167 hdac3 coding upstream 153645 12178915 ~ 12205865 (+)
XLOC_007166 rhogd coding upstream 183141 12169979 ~ 12176369 (+)
XLOC_007165 hspa9 coding upstream 190613 12142813 ~ 12168897 (+)
XLOC_007164 kctd12b coding upstream 230380 12109535 ~ 12129130 (+)
XLOC_007163 frmpd3 coding upstream 391678 11762991 ~ 11967832 (+)
XLOC_007170 thoc2 coding downstream 30181 12391871 ~ 12486627 (+)
XLOC_007171 si:dkey-48g21.7 coding downstream 992011 13353701 ~ 13355015 (+)
XLOC_007172 NA coding downstream 1036745 13398435 ~ 13398814 (+)
XLOC_007173 pls3 coding downstream 1091440 13453130 ~ 13525458 (+)
XLOC_007174 cnga2a coding downstream 1390742 13752432 ~ 13843665 (+)
XLOC_007161 NA non-coding upstream 908630 11449862 ~ 11450880 (+)
XLOC_007154 NA non-coding upstream 1511953 10846460 ~ 10847557 (+)
XLOC_007153 CR855117.2 non-coding upstream 1543097 10816297 ~ 10816413 (+)
XLOC_007152 NA non-coding upstream 1560095 10798882 ~ 10799415 (+)
XLOC_007147 NA non-coding upstream 1867269 10490798 ~ 10492241 (+)
XLOC_007175 NA non-coding downstream 1596726 13958416 ~ 14010101 (+)
XLOC_007176 NA non-coding downstream 1606884 13968574 ~ 13978192 (+)
XLOC_007178 NA non-coding downstream 1828315 14190005 ~ 14197482 (+)

Expression


Co-expression Network