XLOC_007174 (cnga2a)


Basic Information

Item Value
gene id XLOC_007174
gene name cnga2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 13752432 ~ 13843665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00014183
ATGACCTGTCAACTGTTGTTGGAAAGCATGGATTTATCACCACACAGACTGTCTGTGAAAACTTCTATTGAAGATGAATCGGAGCCTGCTGACTGCACTTTCAGCCGTGATCAGTCCATATGTGATGACACATCATCAGAATTACAGCGAGTGGCCACCCTTGAACAGCAAAGACTGAACTCTTTCCGTGACAGAGGAGCACTCTCAAGGTTGGTGAATATGGTAGTCACTCTTAGAGAATGGGCCCATAAAAGCCTCCAGGAAGAGGAGGAAAGGCCAGATTCATTCTTGGAGCGCTTCCGAGGACCTGAACTTCAAATTGCTACTAGTAGATTAAGCATCAGTAGACATGATATTCAGGATGGGAACACGAGTGCCAAAACTAAGAAAAAGTCTGATGTTTTCATATTGTCACCTGCTGATGACCTGTATTACCGCTGGCTGTTTGTTATTGCCTCAGCTGTATTGTACAACTGGTGTTTTGTAGTTGCTAGAGCCTGCTTTAATGAGCTTCAAACCAGGAATTTTATTCTGTGGCTTTTTTTGGATTATCTATCTGATGTCATATATATCCTGGACACTTGTGTAAGACTAAGAACAGGTTTCCTTGAACAAGGTCTTCTGGTGAAGGACCTAATCAAATTAAGAGAAAGCTACTTTCATACTCTACAGTTCAAGCTTGACTTGCTATCAATAATACCCACAGATTTAGGTTACATCGTCATTGGCATTCATGTACCAGAGCTTCGTTTGAATAGACTTATGCGCTTCTCACGCCTGTTCGAATTCTTTGACCGTACAGAGACCCGCACCAGCTACCCCAACTTGTTCCGTATTTGCAACTTGGTGCTCTATATTCTAGTAATTATTCACTGGAATGCTTGCATCTACTTTGCTATCTCCAAATCTCTGGGTTTTGGATCCGATCAATGGGTCTACCCAAACATCTCTGACCCTAAGTTTGGGACACTCACACGAGGATACGTGTACTGCCTTTACTGGTCAACCCTCACATTGACAACCATCGGGGAAATGCCAGCTCCAGTCCAGGATGAGGAGtatctttttgttgtttttgatttTCTAGTTGGGGTTTTAATTTTTGCAACCATTGTTGGTAATGTTGGAGCAATGATCTCCAACATGAATGCCACTCGTGCTGAATTTCAAGGTCAGATTGATGCCATTAAACATTACATGAAGTTCCGAAAGGTTAGCAAAGAGCTGGAAGCTAGAGTCATCAAATGGTTTGACTATTTGTGGACAAATAAGAAAACAATTGATGAGCAGGATGTCCTAAAAAATCTACCAAACAAACTTCGGGCTGAAATTGCTATTAATGTGCACTTAGAAACATTGAAGAAGGTTCGTATTTTCCAGGACTGTGAGGCGGGGCTTTTGGTGGAACTTGTTCTTAAGCTGCGGCCACAGGTCTTTAGTCCAGGAGACTACATCTGCAGAAAGGGAGACATAGGAAAAGAGATGTATATCATCAAAGAGGGTTGCCTTGCTGTTGTGGCTGATGATGGGGTGACCCAGTATGCACACTTAACTGCTGGAAGCTGTTTTGGTGAAATTAGCATCCTAAACATAAGAGGAAGCAAAATGGGCAATCGTCGCACTGCTAACATCAGAAGTATTGGCTACTCTGATCTCTTTTGTTTGTCAAAAGGTGACCTGATGGAGGCTGTAATGGAGTATCCAGATGCTAAGAAAGTTCTGGAAGAGAAGGGAAGACAAATTCTTATAAAAGAGGGTTTGCTCGAGGAGGTGGAGGCAGACGGAATAGGGGTGGAAGATATTGAGAAAAGAGTAGAGAGGATGGAAGATactattgaaatattacaaactCGATTTGCTCGACTATTGGCTCAATATACAGCAACTCAGCAGCACCTGAAGCAGAGACTTACCACTCTGGAATGCAGAACCAATCATTCTGGCAGTGGATTCCTTTCTGATGGTAATGAAAGCACTATTGATGGGGATGGTACAAACAGTGAGGTCAACATTCACCTTTAAGTGCTAAgcatggtttgtttgtttgtttgtttgctttatttctagagcacatttaaaaacaacagatgttgaccaaagtgctt

Function

symbol description
cnga2a Enables ion channel activity. Acts upstream of or within cilium assembly and ion transport. Is integral component of membrane. Is expressed in brain; olfactory epithelium; spinal cord; and testis. Orthologous to human CNGA2 (cyclic nucleotide gated channel subunit alpha 2).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0060271 cilium assembly biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005222 intracellular cAMP-activated cation channel activity molecular_function
GO:0005223 intracellular cGMP-activated cation channel activity molecular_function
GO:0030553 cGMP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061005-1 Enables ion channel activity. Acts upstream of or within cilium assembly and ion transport. Is integral component of membrane. Is expressed in brain; olfactory epithelium; spinal cord; and testis. Orthologous to human CNGA2 (cyclic nucleotide gated channel subunit alpha 2).

Ensembl:

ensembl_id ENSDARG00000102968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00014183 True 2105 mRNA 0.42 6 13752432 13843665

Neighbor

gene id symbol gene type direction distance location
XLOC_007173 pls3 coding upstream 226974 13453130 ~ 13525458 (+)
XLOC_007172 NA coding upstream 353618 13398435 ~ 13398814 (+)
XLOC_007171 si:dkey-48g21.7 coding upstream 397417 13353701 ~ 13355015 (+)
XLOC_007170 thoc2 coding upstream 1265805 12391871 ~ 12486627 (+)
XLOC_007168 si:ch211-125c23.3 coding upstream 1384728 12316581 ~ 12367704 (+)
XLOC_007175 NA coding downstream 114751 13958416 ~ 14010101 (+)
XLOC_007176 NA coding downstream 124909 13968574 ~ 13978192 (+)
XLOC_007177 rraga coding downstream 183762 14027427 ~ 14094406 (+)
XLOC_007178 NA coding downstream 346340 14190005 ~ 14197482 (+)
XLOC_007179 nlgn3a coding downstream 381065 14224730 ~ 14534457 (+)
XLOC_007169 NA non-coding upstream 1390742 12359510 ~ 12361690 (+)
XLOC_007161 NA non-coding upstream 2301552 11449862 ~ 11450880 (+)
XLOC_007154 NA non-coding upstream 2904875 10846460 ~ 10847557 (+)
XLOC_007184 NA non-coding downstream 854669 14698334 ~ 14740809 (+)
XLOC_007185 NA non-coding downstream 878359 14722024 ~ 14725486 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_01251696_01259949 CNGA2, CNGA5 coding CI01000032 null 1251347 ~ 1260248 (+)