Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_007188 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 14835312 ~ 14841159 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0044085 | cellular component biogenesis | biological_process |
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0000027 | ribosomal large subunit assembly | biological_process |
| GO:0071826 | ribonucleoprotein complex subunit organization | biological_process |
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0022618 | ribonucleoprotein complex assembly | biological_process |
| GO:0065003 | protein-containing complex assembly | biological_process |
| GO:0071840 | cellular component organization or biogenesis | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0042255 | ribosome assembly | biological_process |
| GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0000470 | maturation of LSU-rRNA | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0042274 | ribosomal small subunit biogenesis | biological_process |
| GO:0034622 | cellular protein-containing complex assembly | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0030684 | preribosome | cellular_component |
| GO:0030687 | preribosome, large subunit precursor | cellular_component |
| GO:0030688 | preribosome, small subunit precursor | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0031981 | nuclear lumen | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043228 | non-membrane-bounded organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043232 | intracellular non-membrane-bounded organelle | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0030515 | snoRNA binding | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko03230 | Viral genome structure |
| ko05164 | Influenza A |
| ko05169 | Epstein-Barr virus infection |
| ko05016 | Huntington disease |
| ko03200 | Viral proteins |
| id | description |
|---|---|
| ZDB-GENE-091204-389 | No description available |
| ensembl_id | ENSDARG00000100366 ENSDARG00000102120 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00014204 | False | 5043 | lncRNA | 0.36 | 4 | 14835312 | 14841159 |
| TCONS_00016150 | False | 4235 | lncRNA | 0.38 | 5 | 14835945 | 14841159 |
| TCONS_00016154 | False | 4315 | lncRNA | 0.38 | 4 | 14836036 | 14841159 |
| TCONS_00016153 | False | 4035 | lncRNA | 0.38 | 5 | 14836036 | 14841159 |
| TCONS_00016152 | False | 4541 | lncRNA | 0.37 | 3 | 14836036 | 14841159 |
| TCONS_00016155 | False | 4246 | lncRNA | 0.38 | 4 | 14836036 | 14841159 |
| TCONS_00016156 | False | 3960 | lncRNA | 0.38 | 4 | 14836036 | 14841159 |
| TCONS_00016151 | False | 4261 | lncRNA | 0.38 | 4 | 14836036 | 14841159 |
| TCONS_00016157 | False | 4609 | lncRNA | 0.38 | 3 | 14836038 | 14841159 |
| TCONS_00016158 | False | 4149 | lncRNA | 0.38 | 5 | 14836046 | 14841159 |
| TCONS_00016159 | False | 4232 | lncRNA | 0.38 | 4 | 14836069 | 14841159 |
| TCONS_00016160 | False | 4202 | lncRNA | 0.38 | 4 | 14836084 | 14841159 |
| TCONS_00016161 | False | 4492 | lncRNA | 0.38 | 3 | 14836089 | 14841159 |
| TCONS_00014200 | False | 4783 | lncRNA | 0.38 | 2 | 14836090 | 14841159 |
| TCONS_00016162 | False | 4302 | lncRNA | 0.38 | 4 | 14836104 | 14841159 |
| TCONS_00016164 | False | 4477 | lncRNA | 0.38 | 3 | 14836116 | 14841159 |
| TCONS_00016163 | False | 4236 | lncRNA | 0.39 | 4 | 14836116 | 14841159 |
| TCONS_00016165 | False | 3741 | lncRNA | 0.38 | 4 | 14836259 | 14841159 |
| TCONS_00016166 | False | 3798 | lncRNA | 0.38 | 5 | 14836262 | 14841159 |
| TCONS_00016167 | False | 3747 | lncRNA | 0.38 | 5 | 14836314 | 14841159 |
| TCONS_00016168 | False | 4692 | lncRNA | 0.37 | 1 | 14836468 | 14841159 |
| TCONS_00014201 | False | 3558 | lncRNA | 0.37 | 5 | 14836502 | 14841159 |
| TCONS_00014202 | False | 3423 | lncRNA | 0.37 | 4 | 14836594 | 14841159 |
| TCONS_00016169 | False | 3423 | lncRNA | 0.37 | 5 | 14836628 | 14841159 |
| TCONS_00014203 | False | 679 | lncRNA | 0.43 | 4 | 14836632 | 14838118 |
| TCONS_00016170 | False | 3656 | lncRNA | 0.37 | 3 | 14836641 | 14841159 |
| TCONS_00016171 | False | 3332 | lncRNA | 0.37 | 4 | 14836670 | 14841159 |
| TCONS_00014205 | False | 3538 | lncRNA | 0.37 | 5 | 14836719 | 14841159 |
| TCONS_00014206 | True | 198 | snoRNA | 0.53 | 1 | 14837073 | 14837270 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_007187 | fhdc2 | coding | upstream | 6826 | 14806692 ~ 14828486 (+) |
| XLOC_007186 | NA | coding | upstream | 29290 | 14785490 ~ 14806022 (+) |
| XLOC_007184 | NA | coding | upstream | 94503 | 14698334 ~ 14740809 (+) |
| XLOC_007185 | NA | coding | upstream | 109826 | 14722024 ~ 14725486 (+) |
| XLOC_007183 | cetn2 | coding | upstream | 168756 | 14662116 ~ 14666556 (+) |
| XLOC_007189 | slbp | coding | downstream | 526 | 14841685 ~ 14846166 (+) |
| XLOC_007190 | ccdc142 | coding | downstream | 6145 | 14847304 ~ 14865340 (+) |
| XLOC_007191 | NA | coding | downstream | 25420 | 14866579 ~ 14886131 (+) |
| XLOC_007192 | BX119314.1 | coding | downstream | 68394 | 14909553 ~ 14909670 (+) |
| XLOC_007193 | NA | coding | downstream | 151418 | 14992577 ~ 14996925 (+) |
| XLOC_007178 | NA | non-coding | upstream | 637830 | 14190005 ~ 14197482 (+) |
| XLOC_007176 | NA | non-coding | upstream | 857120 | 13968574 ~ 13978192 (+) |
| XLOC_007195 | NA | non-coding | downstream | 313424 | 15154583 ~ 15155416 (+) |
| XLOC_007198 | BX572078.1 | non-coding | downstream | 363776 | 15204935 ~ 15210747 (+) |
| XLOC_007175 | NA | non-coding | upstream | 825211 | 13958416 ~ 14010101 (+) |
