LOC111194217 (pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342)


Basic Information

Item Value
gene id LOC111194217
gene name pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 695903 ~ 717323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186914
agagtgttgtGTGTACAGGAACAATGAAGTGGCATCCAAACCCGGAGCAGATCCACTGCATTCAGTCCTGTGAGCCGTTTGGTGGGGATGGCTGGTGCGACACCATCAATAACAGAGCTTACTGTCAGTACGACGGAGGAGACTGCTGCCCCTCCACTCTCTCCACCAGAAAGGTGATCCAGTTCGGGGTGGACTGTGATAATGACGAGTGTACCTGTCGAGACCCCGAGGCCGAGGAGAACAAGAACCGAGCCGAGCGTCTAGAACCCGGAGCTCCGTGAGACGACAAACTTCAGCACTGCCTCCTGGAGAAACATctcagaaaagaagaagaagaaaaatctgcaGAAcccaaaacagcagcagcagcagctccactcctccttccaatctataatctataaaatATCCACTAATATATTTTGAGAAGTTCTAACATAGCAGTAGATACGTGTAGATATGACATATTTGATCAATAtatcttaaaatcatttatattaaaaacataggAACCAAGAAAACGGACAATAAAtctttcatatatttatatatagttttataaaaaTGCTGTTCTGACTGATCCTGTAGTTTTAGATTAGCTCCACATATCCTCCTCTGTTAATAATCAATAACGTCTTCAGCAGCACAGGCCTATATATCAGtgtatatatcacaatatatgcATGAATACCAATACAGATACGCAAATACATAAACCTGAAATATACAGTCTGCTATTCCTCTCTACTGTTGTGTCCCTCAGTGTGTGGTTTTACTGATATATTATCAATAAAGTgaacacaagaaaaaaacacgAAACAAGGAATTTATAccattttttctgttattttaaatcATCATTGAGTTTCATTAaatcatca
>XM_022677681.1
ATGGACTCGTGCAGTGCTGTGAAGGTGGATCATGCGTTTGTTAACTGTACTCCcgacacacaccccacacactgcTCTGTTTCCTGCCATCGAGGATACACTCTCAGTGTGCTGAGCGGCTCAGGACTTCAGCCTCAGCAGAGAGAGGTGGATCTGGTGTGTGAGAGCGGTGTTTGGGATCGGATGATCACCTGCCAGCCTGTAGACTGCGGCGTTCCCAACGAGTCCCACGTCtacttctcctccttctcctgcCCCTGGGGCACGACGTTCGGAAAACAGTGTACCTTTACCTGCAGAGCTCCTGCCATCCTGCAGGGTGAGAGTGATACCCTGGCGTGTCTGGAAGACGGGTTGTGGTCGTTTCctgaagcttactgtaaaatcGAGTGTCTGGATCCACCAGTGATTCCTAATGCTAAACTGCTGGTGCCGCAGTGTGAGGGCAGCCGGCACGACGTCGGCACGGTGTGCAGCTACAAGTGCAGCCCCGGCTACTTCGTCACTGGAAcactcagtaaaaaaaataagaggagGATACTGAGGTTGGAGTGTATGGAGGGTGGGAGGTGGCAGCAGGGGGGCTGTACCCCGGTCTCGTGCCCGTCTCTGCCCGCTGTGTTTGAGGGCATGTACTCCTGTACCAACCGGCGGGACTTTAACAGTGTCTGCACCCTGCACTGCCCCAACCCCACAGAGaggagtgttgtGTGTACAGGAACAATGAAGTGGCATCCAAACCCGGAGCAGATCCACTGCATTCAGTCCTGTGAGCCGTTTGGTGGGGATGGCTGGTGCGACACCATCAATAACAGAGCTTACTGTCAGTACGACGGAGGAGACTGCTGCCCCTCCACTCTCTCCACCAGAAAGGTGATCCAGTTCGGGGTGGACTGTGATAATGACGAGTGTACCTGTCGAGACCCCGAGGCCGAGGAGAACAAGAACCGAGCCGAGCGTCTAGAACCCGGAGCTCCGTGAGACGACAAACTTCAGCACTGCCTCCTGGAGAAACATctcagaaaagaagaagaagaaaaatctgcaGAAcccaaaacagcagcagcagcagctccactcctccttccaatctataatctataaaatATCCACTAATATATTTTGAGAAGTTCTAACATAGCAGTAGATACGTGTAGATATGACATATTTGATCAATAtatcttaaaatcatttatattaaaaacataggAACCAAGAAAACGGACAATAAAtctttcatatatttatatatagttttataaaaaTGCTGTTCTGACTGATCCTGTAGTTTTAGATTAGCTCCACATATCCTCCTCTGTTAATAATCAATAACGTCTTCAGCAGCACAGGCCTATATATCAGtgtatatatcacaatatatgcATGAATACCAATACAGATACGCAAATACATAAACCTGAAATATACAGTCTGCTATTCCTCTCTACTGTTGTGTCCCTCAGTGTGTGGTTTTACTGATATATTATCAATAAAGTgaacacaagaaaaaaacacgAAACAAGGAATTTATAcc

Function

symbol description
pappa2 Enables peptidase activity. Acts upstream of or within several processes, including angiogenesis; notochord development; and regulation of Notch signaling pathway. Is expressed in several structures, including axial mesoderm; bone tissue; nervous system; pleuroperitoneal region; and ventral mandibular arch. Orthologous to human PAPPA2 (pappalysin 2).

NR:

description
PREDICTED: pappalysin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186914 False 881 TUCP 0.40 3 695903 706948
XM_022677681.1 True 1534 mRNA 0.48 7 695950 717323

Neighbor

gene id symbol gene type direction distance location
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding downstream 272115 286350 ~ 423788 (-)
cenpl cenpl coding downstream 519237 173241 ~ 176666 (-)
eif2b3 eif2b3,ei2bg,LOC107720854,LOC107700990,LOC107722074,LOC107599900 coding downstream 549698 127085 ~ 146205 (-)
LOC103021456 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076 coding downstream 572231 95083 ~ 123672 (-)
LOC111194215 NA coding downstream 606373 88370 ~ 89530 (-)
pappa2 NA coding upstream 700 718023 ~ 750580 (-)
tnn NA coding upstream 274570 991893 ~ 1026466 (-)
trove2 trove2 coding upstream 372914 1090237 ~ 1102807 (-)
shh shh,LOC108411758 coding upstream 627741 1345064 ~ 1360413 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding upstream 738130 1455453 ~ 1487674 (-)
G138136 NA non-coding downstream 189465 485697 ~ 506438 (-)
G137721 NA non-coding downstream 269375 426235 ~ 426528 (-)
G137719 NA non-coding downstream 275504 418761 ~ 420399 (-)
G137710 NA non-coding downstream 309546 281116 ~ 386357 (-)
G137659 NA non-coding downstream 501905 193354 ~ 193998 (-)
G138160 rfwd2,LOC107658354,LOC107726924 non-coding upstream 58296 775619 ~ 780533 (-)
G138166 NA non-coding upstream 140625 857948 ~ 864771 (-)
G138195 NA non-coding upstream 320544 1037867 ~ 1039082 (-)
G138196 cacybp non-coding upstream 324210 1041533 ~ 1044679 (-)
G138198 NA non-coding upstream 328973 1046296 ~ 1047398 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 333209 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 1760372 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2333077 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2378278 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 2439427 3156750 ~ 3175353 (-)

Expression


Co-expression Network