G138160 (rfwd2,LOC107658354,LOC107726924)


Basic Information

Item Value
gene id G138160
gene name rfwd2,LOC107658354,LOC107726924
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 775619 ~ 780533 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186921
gacgctgtgtatcaaaagaagaaagagagagagagagagagagtatatagAGACTATAGGCTCAAAAGAACGGCAGAGCAGTTgataatttatacaataaaaagcGTTTCATCGTGTTCTGGTCTTGTGCTTTGGCTTTTTTAACTCGTGTAGCTCTACTTCTGTTAGATTAGCCTCTACTGATTTTATAAATTTACACGTGTGGGAGATTCTCCGCTCGAACAAATCTCTCTCTATAATCATAGCGCCTTAAAATCATCAACAACCAccacttcagaagaggcttctttttttaatcGAAGAATCCGCTACGCGctcatcatcctcatcttcTTCTCGCATCGCTCATCATCACCCCTTTCACCGGAGAGCAGCACGCTCAAATCTGCTCACAAAGTTCAGacacacactcacgctctcacacacactcgtctCGCTGGAAACGCCGGCTGCAGCTCTAGCCGAGCTTTAGTGCTCCTGTATTTCTTTGCAGAGAAGAGAAGCTGAGCGATGGTTCAATAAAAGCGCCTGATGATTGATTCCAGCAGATCTTCAGACCAGCTCGAGTAcCTTGATTGTTCCTTGACTGTTGGCTGCGATCAACACGTTCGACTCCCCGTCTGGCAACGCACGCCAGCACACAGCACTAACAAACTCATTAGTGTCGTCTTCCTTCTTATCCTTATCCAAAACACTCTTCACAGTGTCGAACTTGaaggtcagcagtgttttggAGAGCCCCTTGTAGTACAGATACAGAGAGTTGTTTTCACTTCCTGTCGGCAGAAGGAAACAgggttattttgtattttatttttaagtgagtaaaaatcaatatatataggagagttgaggt

Function

symbol description
rfwd2 E3 ubiquitin-protein ligase RFWD2

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RFWD2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186921 True 856 lncRNA 0.44 4 775619 780533

Neighbor

gene id symbol gene type direction distance location
pappa2 NA coding downstream 25039 718023 ~ 750580 (-)
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding downstream 351831 286350 ~ 423788 (-)
cenpl cenpl coding downstream 598953 173241 ~ 176666 (-)
eif2b3 eif2b3,ei2bg,LOC107720854,LOC107700990,LOC107722074,LOC107599900 coding downstream 629414 127085 ~ 146205 (-)
LOC103021456 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076 coding downstream 651947 95083 ~ 123672 (-)
tnn NA coding upstream 211360 991893 ~ 1026466 (-)
trove2 trove2 coding upstream 309704 1090237 ~ 1102807 (-)
shh shh,LOC108411758 coding upstream 564531 1345064 ~ 1360413 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding upstream 674920 1455453 ~ 1487674 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding upstream 711283 1491816 ~ 1497588 (-)
G138136 NA non-coding downstream 269181 485697 ~ 506438 (-)
G137721 NA non-coding downstream 349091 426235 ~ 426528 (-)
G137719 NA non-coding downstream 355220 418761 ~ 420399 (-)
G137710 NA non-coding downstream 389262 281116 ~ 386357 (-)
G137659 NA non-coding downstream 581621 193354 ~ 193998 (-)
G138166 NA non-coding upstream 77415 857948 ~ 864771 (-)
G138195 NA non-coding upstream 257334 1037867 ~ 1039082 (-)
G138196 cacybp non-coding upstream 261000 1041533 ~ 1044679 (-)
G138198 NA non-coding upstream 265763 1046296 ~ 1047398 (-)
G138209 LOC108412812 non-coding upstream 436941 1217474 ~ 1218913 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 58296 695903 ~ 717323 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 269999 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 1697162 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2269867 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2315068 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 2376217 3156750 ~ 3175353 (-)

Expression


Co-expression Network