G138198


Basic Information

Item Value
gene id G138198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1046296 ~ 1047398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU186970
CTTCTCTCTCTGGTGTGGTTTGGACACTCTGCTCTGTGGAATAACCTTCACTGCATACATCCGGCTGCTGGCGAGGTCTGTCATCTCATAGCAGCGAGCGAACCCTCCcttTCCCAGGAGCTTTCCTTTAGTGTAAGATCTCCCACTCTTCGGGTCCACCACCACCTGCGCCAGCTCCGGTTTCGGCTGTTCACATTTGTTCGCGGTGTTCCGGTTCGGCTTGGGCGGCGGTGCTGCCGGGGAGCGGTCCGGGGACGGGTTCAGTAATTCCGGGTTCATTATGTGGCAGGAGCGGCGCTGCGCTGTAGTAAAGCTGGTACAGTCCATTCATCCGGGTTAATCCGAGGCGTGGAAGCGGATTATTTCTGGGCTTTTATTCACAAAAATCCAGACCGAACAGATCCGCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186970 True 409 lncRNA 0.56 2 1046296 1047398

Neighbor

gene id symbol gene type direction distance location
tnn NA coding downstream 19830 991893 ~ 1026466 (-)
pappa2 NA coding downstream 295716 718023 ~ 750580 (-)
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding downstream 622508 286350 ~ 423788 (-)
cenpl cenpl coding downstream 869630 173241 ~ 176666 (-)
eif2b3 eif2b3,ei2bg,LOC107720854,LOC107700990,LOC107722074,LOC107599900 coding downstream 900091 127085 ~ 146205 (-)
trove2 trove2 coding upstream 42839 1090237 ~ 1102807 (-)
shh shh,LOC108411758 coding upstream 297666 1345064 ~ 1360413 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding upstream 408055 1455453 ~ 1487674 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding upstream 444418 1491816 ~ 1497588 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding upstream 463235 1510633 ~ 1523685 (-)
G138196 cacybp non-coding downstream 1617 1041533 ~ 1044679 (-)
G138195 NA non-coding downstream 7214 1037867 ~ 1039082 (-)
G138166 NA non-coding downstream 181525 857948 ~ 864771 (-)
G138160 rfwd2,LOC107658354,LOC107726924 non-coding downstream 265763 775619 ~ 780533 (-)
G138136 NA non-coding downstream 539858 485697 ~ 506438 (-)
G138209 LOC108412812 non-coding upstream 170076 1217474 ~ 1218913 (-)
G138226 NA non-coding upstream 202314 1249712 ~ 1250937 (-)
LOC111194256 NA non-coding upstream 223413 1270811 ~ 1299166 (-)
G138231 NA non-coding upstream 250956 1298354 ~ 1368873 (-)
G138254 NA non-coding upstream 310362 1357760 ~ 1450758 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 328973 695903 ~ 717323 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other upstream 3134 1050532 ~ 1101493 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 1430297 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 2003002 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 2048203 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 2109352 3156750 ~ 3175353 (-)

Expression


Co-expression Network