G138289


Basic Information

Item Value
gene id G138289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1688785 ~ 1690952 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187094
ACCTAAGCTAagtttaaagtgtgtttttgaGCAGGTGGAATACAGTATGTATGATACACTTACATCCTTCATATTGCGCTCTTCCATCAACACACTTGACTTTCACCCATCCACCCCACTTGCACCAAAATTCATCCTCTTCACCGTGTATCAAGTATCTTCTTTGACTGCGAAGTAACTGTGACTGATCCAGTAAACATGGAGCTGCAGACAAAGAATAAAAGCTATAATCAATAAATCATCTGCCAATCAGTTGAAGTTTGATAAGAatttaaaaaagggttttatttTACCAACCTTTACAAACAGGCAGCTTCGACCACTGTCCTGATACACACATTACTTGTTTGGGTCCTTCAAGTTTGTAATATGAAGCACACTCAGCTTTTAAGGCCATCCCACCAGCCTCCTCGATAAAATCTCCATTTTCAATAGTGGGGTAAGCTTTACACTCTCTGACTGGAAATAAAAGACTGTTAACTTCAGAAAAGCCTTAGATTAGATTAAAGGTATCATTCtgctaaaatgcactttttctttattcttttgtgAAATACATccggtctctctgagttgtttatgatgctgcacatgaacatgaaactcttcctcaacctccgttgtctgcagcagctagtaaaagaaaatcctcagaaatacgagttgatcagagagacatggcaaatcctgtctttctttagagACCTCTAATCTAGTGAACtgaagcagggctaaatagaaacaccggaacactttttttctcacaaacaaacagctcacaaggcattcattcatactagagacacaactagacactttaaaatgaatgaaaattgtatggaatgagatcttttttaaagcaaatatttTTAGGTGGTGCCAACTTCTCCAGGGTTTCTGATTTGCTggtttgtgtttctgtgcttctgttttctgttttaatccTTTTTCCTAATTTAATAATGCTCTGGTTTTGTTGAAGTAAGTGCATTAAAATGCCctttttttttgatagagcgctttttaattttttttttttaatgcatcataACCTAAAGCGATTTTAAACACACATCATCACAGCTTTCGTTCatgtataatttaaatgtaatttttctttAGATTTGTTACTGATTGATTCCGAGTTAATGGCAGTGGTGTACAGTAAGGctcttctaacccttcagaaaAGGGATGACAAaaggtgcatgtaaataatttcatattatttaaccagaaatatatattattgttatattatgggtactaaccaatcaaaactgctttttaaaaaggcTTCTCCCCTGTGTGTCTATGTGCCCCTTCTGCTGATTTAATGAAAGGTGTATaagactacctttataaagggtttatgaatgatttgtaaagaagattattaatggttattaattaggttgcagatactttaaaactcattatAAAGCAGTTAATAAACATCAACATAGACAGAAATGACAACAGttataacagttaaaaaaatggcaaagtagtgattccacactcatttctactgtcaaacctcaaaatgattgaaaaaacgatggaatgagccCTTTAAGGGTTAAAGTCAGAGTTCCAGGCATTGATTCCAAGTATTGATAGCCTTTGTTTTAtctagaacaaaaaaaaggttccaGTGTGCTGCTTTTAGCTTCATGCTATCATACATTAGCTATATCATACAGGTGAGTTACACTGGATGGCCTTGATTTGCATCTCCACTCCTAAAATTAGAAGTACTTTTAGCTGCTACTGGTAAAACTGATTGCATTGCCATTGAAACTGTATGAGTGTATTTGAGGTGGGAATTACCATGAGTAATTGCTGGTCTTGATGGGTCACTGGAATCTTCTGAACCacctaaaaacaaataaaaaagatcaaacACTTCAAACTGCACAGCGCACGGTTAACAGCTCGACTAAAGATAAAGCTAAAATAGCTCAATCTTTCACTGAAACAAATGAGCTCAAATCCAATTTAATAACAGTTAcgagaggtgggcgataccagGAATTTAGGTATCgatcgatccgataccaagtaaatgcagggccagtattgccgatatcgataccgatatcgatattttttttcaataatttaagatttaatttaaGATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187094 True 2147 lncRNA 0.35 2 1688785 1690952

Neighbor

gene id symbol gene type direction distance location
LOC103023075 kcnt2 coding downstream 7462 1652474 ~ 1681323 (-)
LOC111194258 NA coding downstream 141786 1539103 ~ 1546999 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 165100 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 191197 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 201111 1455453 ~ 1487674 (-)
LOC103045138 NA coding upstream 4793 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 11622 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 18372 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 57906 1748858 ~ 1757008 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding upstream 71157 1762109 ~ 1770217 (-)
LOC111194191 NA non-coding downstream 39243 1648750 ~ 1649542 (-)
LOC111194190 NA non-coding downstream 41948 1646080 ~ 1646837 (-)
G138273 NA non-coding downstream 94743 1593418 ~ 1594042 (-)
G138272 cdc73 non-coding downstream 114078 1568837 ~ 1574707 (-)
G138268 NA non-coding downstream 155221 1532000 ~ 1533564 (-)
G138299 NA non-coding upstream 30698 1721650 ~ 1722178 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 120086 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 136150 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 137444 1828396 ~ 1880995 (-)
G138325 vps4b non-coding upstream 154377 1845329 ~ 1846510 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 587292 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 971462 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 786743 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1359448 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1404649 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1465798 3156750 ~ 3175353 (-)
G138708 NA other upstream 2141769 3832721 ~ 3833670 (-)

Expression


Co-expression Network