G138290


Basic Information

Item Value
gene id G138290
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1638155 ~ 1692315 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187095
tttttataaacattttataaaccaCATAAATTACATgctataaaataagtaaaatgatgaaaaaattcAAGACAACTCTGAGTTCTCTGCTTTTATTGTGGATGAATAAAGAGAACGTAATGATGAAAAGGGTTTGAGTTTTAGGATTTGCAGGTCCTCCGGTCACTCTGACTGTGTGTTTCAGACGAGGATGGGATGGTGAGATTTGCCTCAGGCTCTTCATTTCgcc

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process
GO:0004806 triglyceride lipase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU187095 True 229 lncRNA 0.36 2 1638155 1692315

Neighbor

gene id symbol gene type direction distance location
LOC111194258 NA coding downstream 91156 1539103 ~ 1546999 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 114470 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 140567 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 150481 1455453 ~ 1487674 (-)
shh shh,LOC108411758 coding downstream 277742 1345064 ~ 1360413 (-)
LOC103045138 NA coding upstream 3430 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 10259 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 17009 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 56543 1748858 ~ 1757008 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding upstream 69794 1762109 ~ 1770217 (-)
G138273 NA non-coding downstream 44113 1593418 ~ 1594042 (-)
G138272 cdc73 non-coding downstream 63448 1568837 ~ 1574707 (-)
G138268 NA non-coding downstream 104591 1532000 ~ 1533564 (-)
G138253 NA non-coding downstream 128659 1507992 ~ 1509496 (-)
G138266 NA non-coding downstream 146469 1490928 ~ 1491686 (-)
G138299 NA non-coding upstream 29335 1721650 ~ 1722178 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 118723 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 134787 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 136081 1828396 ~ 1880995 (-)
G138325 vps4b non-coding upstream 153014 1845329 ~ 1846510 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 536662 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 920832 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 785380 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1358085 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1403286 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1464435 3156750 ~ 3175353 (-)
G138708 NA other upstream 2140406 3832721 ~ 3833670 (-)

Expression


Co-expression Network