G138315


Basic Information

Item Value
gene id G138315
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1828396 ~ 1880995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187122
gcatcttggcatcatgttcttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttgatggtggttttaagagtttatttctttcattgttgatgattgctaattatgaagcttacagccaatcaaaacccaaaaatcagtgcctTAGAAAATTGgtatttttagcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatcagcatctctGTAAATGTCACATTTATGTTGCATGTCTATGGATCGGAtccgtatccgatttaggaggACCACATATGGAAGTGGCTTGGAtataatttggaaaaaaaaaaaatcgtatttGGAGCGTTCACACACATATCtgtgaaaaaatcagatctgagccacattgagcaaaaaaaataaaaaatctaatttgagcTACCTCAGCTTCTTCAGCCAGTTTAAAACTACAGAAGTGAGCATCACCAAACAAGTTTTGTTAGATTACTGGAACTACATGTGGGGTAAAGAGGGACACTGTACATCTGAATCTGGATTGTTAGTGTGAATGCTTAAATGTACTCtaaacaccttaaattcacTCAAAAACAGCTTAAACCTTTCAGAACAAGCCTGCTCTGCTCAGCCGTGGCTCAAAATCTCCTGCTCCTGCAGCGCCCTCTGCTGGCAAGGAGGCGAAACAACTCGAACCAGCGAGTTCTCGCCCTCGTACAGTTCAGTGGACCCTTAGTAGCCCCTGAGGtctcccaacacacacaaacacacacgtacacacacacacacacattcctacACACACGtgtgcacacactcacatacatgCACAGTAAACATCTCCAAACAGGAGCCCCACACAGAGAATCGAGGATAAGGCAGAAATGGCAGACCCAGGCCGATTTTTTATCCTAGAACACAGTAACTGTTCACGAGTCAAACATTGAGTCTAACATGGAGCGTCAGTGCTTTTATCTAGAACCCAAAAAAACCCACATTATTAACAGAACTAACTCACACAGGAATGTCAAACATTTCCCTCTGCCAGCAAAGGAGACCAAACTGACCGAAGCTCACAAGTTACAAGAGACAGCGGGACAGACTgcgttagtgtgttagtgtgtgtgtgtgtgtgtgtgaatgataAGGACATAAACTCGTATGGCACACGGTCACACCTCCGTCAGAGAGGTGATTCAAACAGAgtaaattagtttaaaatagagtagagttttaaaaacaaaacaacttaAAAGATACAGATTAAGATGGATCTTGTTTTTAGTCTAGAGCTTAATTTAAGAGATTAAGGGTCTAGAAAGGGAAATCCTTAGTGATGATCGTATATATCAGTGAAGtcttaaaatcaaacaaaaaacaaaacacttagCATGCCTTTAAAAGCTGAAATCTAAAGTTAGAATCTAATATctatggctacgttcacattacaggCCTCATATAtttggtgtatttatttatttaaaaattatttgctCAGATCTGACTTTTCCTTCACCTTAAATATGAAGATAAAATGTTCTTTAGCCATATACTTGCTTCCAAATCCCAAAAAGCTCCCTGCTCACTAACATTAAACTATATTTACACCCAAATAGGGCTAAATACGTATGTGTAGCAGGGCTCTGTGTACACGAACCAAATTATACACAGCTCTCATCATGCATAACATATGATTGatcacctccttgtttctacacccaatATACATctattattttagcattttgtaGAGTTTTCTACAGTATAATTACTGCAGACTGCAGTTAACAATACCAATGATAAAACTACTCCTATAAaactgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtgaaatcaaagaaactcatcatttttaagtgctctattatttttttccagagctgtatatctgatCTAGGACCACATATTCAGATTTGGGTTCCCATTATAATAAATCAGCCgagtaatgtgaacgtagcccaAGAATGTTCAGCTTTTTTACCTGTGgttgagtttttctttaagcTCAACTATACTTTTGTTGTTTTGAGGGGAAAAACTAACAGATAATTCACTAACCTTAAAATTAATTCTCTTTTTAAGGTGGTGTACAAGGTTTAACAACCAATCCCAGTTCTTAGTGTACTGAAGTGgtcaacaacacaaaaaaatggcAGTGACCACAGTgtgtattaataaaacataaaagtagAAGAAAAGTGTTGTTTGTACGGCCACTGCCCATCTCagtagcatgtgtgtgtgtgtgtttattgtgtgtttggGGCAGATTATTACAGTTTAAAGTGGTGGAATCTCCTCATATTTTACTCTCGTTTATCAGCTGCTTTAGACTGCTCCCTCTGGATCATACAGCGCCGGACGATGCTGTCGAAACTGCCCAGGTAGAAGAGCGCAATGGTGCGGAACAGCCCCATCG
>TU187123
gatgtcagaaagctgcaggagagcggaggagagCTATTcaataaaggtaaaaaatactttttaatcatgttttaataaataaatacacccaaaattcattttacaccagagttctccttccTTTAACTAAAGATACCAAACATGACTGAGCTGACAGACTACCGTACATTTAAAAGGTGGATACTACAGAAATTAACGTTTTATTAAACTACTGCTTCAGCTGATTTAACTCTTAAGGCTTAAAAATGGGCCACACTACGACCCAAGCTAAACAGAGCAGCGTAACACAGCCGACAGAATCTCAACAACAGAGAGGTGGTCCCTCTGATCCATCACACTCCTCCTACAGCTGATGATGCAAAGGAAGACGAGAAGGAATTCAGATTATCTACATCGAGCGTTTGTCCCTCTCTGCTGCATTCATGAAGCTTTTCGCACAGAACGGGGGATTTATCTGAAgtccttaaaaataaatcaataacgtAAACAGACACCATTCACTCCAGGTTAAACCAAAGCAGAGCAAAGGCAACTTCAGTGCAGAGCTTCACTCAGTACAGTTTAATTatcataaaacatgttttctagATTTGCAACAGTGAAGAATCTGATTTACGGTCCCTGTTTTACCCCAAATGTAGAACTAGGCGGAATCCAAAcaactatttttgtttggatgatttatatatattgtatattaattattttatattattctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcattaatgagaaataacaaaaaagatgcagagctttcagacctaaaataatgcaacaatatattataatatcattcataaagagattttaagagtttagaaatctgaaatatttggtggaataaccctggtggtttttaatcacatttttttcatgcatcttggcatcatgttcttctcctccaccagtcttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187122 True 2608 lncRNA 0.39 2 1860386 1880995
TU187123 False 979 lncRNA 0.35 2 1828396 1863939

Neighbor

gene id symbol gene type direction distance location
fyttd1 LOC107709339 coding downstream 18745 1804837 ~ 1809651 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding downstream 58179 1762109 ~ 1770217 (-)
LOC111194260 NA coding downstream 71388 1748858 ~ 1757008 (-)
zbtb41 zbtb41,LOC102777630 coding downstream 110967 1709324 ~ 1717429 (-)
LOC103022462 NA coding downstream 123028 1702574 ~ 1705368 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding upstream 42685 1923680 ~ 1965329 (-)
LOC103041268 LOC108430762 coding upstream 88363 1969358 ~ 2070958 (-)
LOC103039403 LOC108430760 coding upstream 353582 2234577 ~ 2292404 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding upstream 421306 2302301 ~ 2312661 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding upstream 489829 2370824 ~ 2390816 (-)
G138322 LOC103043726,LOC105899208 non-coding downstream 11258 1811038 ~ 1817138 (-)
G138299 NA non-coding downstream 106218 1721650 ~ 1722178 (-)
G138289 NA non-coding downstream 137444 1688785 ~ 1690952 (-)
LOC111194191 NA non-coding downstream 178854 1648750 ~ 1649542 (-)
LOC111194190 NA non-coding downstream 181559 1646080 ~ 1646837 (-)
G138342 NA non-coding upstream 48128 1929123 ~ 1929509 (-)
G138343 NA non-coding upstream 77708 1958703 ~ 1959724 (-)
G138358 NA non-coding upstream 352547 2233542 ~ 2306381 (-)
G138366 NA non-coding upstream 432939 2313934 ~ 2314150 (-)
LOC103040233 NA non-coding upstream 511602 2392597 ~ 2394885 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 726903 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1111073 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 596700 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1169405 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1214606 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1275755 3156750 ~ 3175353 (-)
G138708 NA other upstream 1951726 3832721 ~ 3833670 (-)

Expression


Co-expression Network