G138329 (vps4b)


Basic Information

Item Value
gene id G138329
gene name vps4b
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1848857 ~ 1852968 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187146
TTtagcaaagtgcacaaaatacaggatctcagaaagctgcaggagagcggaggagagctatttaacaaaggtaaaAATGCTTatcacgttttaataaataaatacacccaAAGTTTCACACCTTTTCACTTCCTGTAAAAGCAAAACGAGGCAGCCCTGCACTGTGCAGAACTCACACTTACGATTACACACAATGAAAGAAACTGCAGTTTCACAGTTTTCTGTCAAATATAACTGCAGTATAGAGGAAATTACAGAGGAGATTATTATGTATAATGGATCGCGCACATTTAAGTGCTTGGCCCTCTACAGGCCTCTTAGTAATGCCTAATGTGGTCCAACAATGCAAGATAAAGGGCTTCAAAGGGAAATTTTGTAAATATACAAAAGCGTCTGGTCTGAAATAGTTACGGTTATACTACAGCTCAGCTCACATCTCCTCAACGCCATCCTCTCAAAAACGATCTTTACAGACACAAAGAGGCCTAAAAGTATTGTTTTAGAGATCTCCATACCGATAACAtataatatctgtaataatCCCCTCGCTCTACTGGATAATTcgttttcagttcagttttccaGTCCATTTACACGATCACCACCCTCTAAACCATCCGCAGCTTTCATTAATCAAACCCAAAACAAGGCTTTCGCTCCAAGAATGAGCCGAAACATCTCTGAACTTCATAGTAGTGCCATGTACCAGTGAACGTAGTTGTTCATGAGAAAAGTAGCTAAGCTGGAAGTGTAGACGGAGACGGTTACGATATGAGATTCGTCTAAAAGAGAGACACGTATTGAACATTTAGCCTGGGCTTGtagtttaaaagagaaaaaactaaaacagaaaaaaagaaactaaggcttgtatatgaatgaatgaatgaatgaacacacTCATCAGGTTCCCATGTAGCGTCCAGACCAGCTTAAACCTGCCGTCTGCTCAGCCACCAGCCGAAGGGAAAAAAGTCCAGGAGGAggaaagagggggggggggggagaaaaaacaagaaacagaagaaGACTTTACAATCAGGTTGTGTTTGCTTTGGTTCTGGAAGAGACGCCTCCCTCTCAGCCTTCCTGGCCGAAGTCCTCAGTGAACTTCCGTAGCTTCTCCAGGTCCTGCTCGTTCACGGTGGGCTTTGTGTTGGATAGTGATCGTAACATATCCGGCATGCTAACCACAGGCTCCAAGAGCTTATCCCCAGGAACCTCCATCCAAGTCATCTCTACGGCGTTCGGATCACCTGGAGAACAAGGGGTCAAAAGATCATCCAGAATGAGGTTCGGATCATCTCTTGATGGGCCTCGTACCTGTTTAAAGTGTGTAGCAGACTGAACCTTCCTGACTGGCTGCATCAGTGCGTCTCTCACTATAATGCTGATATCGGCTCCTGAGTAGCCCTCAGTCTTCTTCCCCAGAGTGTTGAAGTCTGCTTCTGTGAGGCTGTTGGGTGTGCTGCCCAGGTGCAGCTTAAACATGAAGGAACGAGCGTGCTCCTCCGGGAGGGGGATGTAGATGCGCTTCtcaaatctgcaaaaaaaaaaaagtcagttttacagtaaaattccaa
>TU187147
CCTGCACTGTGCAGAACTCACACTTACGATTACACACAATGAAAGAAACTGCAGTTTCACAGTTTTCTGTCAAATATAACTGCAGTATAGAGGAAATTACAGAGGAGATTATTATGTATAATGGATCGCGCACATTTAAGTGCTTGGCCCTCTACAGGCCTCTTAGTAATGCCTAATGTGGTCCAACAATGCAAGATAAAGGGCTTCAAAGGGAAATTTTGTAAATATACAAAAGCGTCTGGTCTGAAATAGTTACGGTTATACTACAGCTCAGCTCACATCTCCTCAACGCCATCCTCTCAAAAACGATCTTTACAGACACAAAGAGGCCTAAAAGTATTGTTTTAGAGATCTCCATACCGATAACAtataatatctgtaataatCCCCTCGCTCTACTGGATAATTcgttttcagttcagttttccaGTCCATTTACACGATCACCACCCTCTAAACCATCCGCAGCTTTCATTAATCAAACCCAAAACAAGGCTTTCGCTCCAAGAATGAGCCGAAACATCTCTGAACTTCATAGTAGTGCCATGTACCAGTGAACGTAGTTGTTCATGAGAAAAGTAGCTAAGCTGGAAGTGTAGACGGAGACGGTTACGATATGAGATTCGTCTAAAAGAGAGACACGTATTGAACATTTAGCCTGGGCTTGtagtttaaaagagaaaaaactaaaacagaaaaaaagaaactaaggcttgtatatgaatgaatgaatgaatgaatgaatgaacacacTCATCAGGTTCCCATGTAGCGTCCAGACCAGCTTAAACCTGCCGTCTGCTCAGCCGCCAGCCGAAGGGAAAAAAGTCCAGGAGgaggaaagggggggggggagaaaaaacaagaaacagaagaaGACTTTACAATCAGGTTGTGTTTGCTTTGGTTCTGGAAGAGACGCCTCCCTCTCAGCCTTCCTGGCCGAAGTCCTCAGTGAACTTCCGTAGCTTCTCCAGGTCCTGCTCGTTCACGGTGGGCTTTGTGTTGGATAGTGATCGTAACATATCCGGCATGCTAACCACAGGCTCCAAGAGCTTATCCCCAGGAACCTCCATCCAAGTCATCTCTACGGCGTTCGGATCACCTGGAGAACAAGGGGTCAAAAGATCATCCAGAATGAGGTTCGGATCATCTCTTGATGGGCCTCGTACCTGTTTAAAGTGTGTAGCAGACTGAACCTTCCTGACTGGCTGCATCAGTGCGTCTCTCACTATAATGCTGATATCGGCTCCTGAGTAGCCCTCAGTCTTCTTCCCCAGAGTGTTGAAGTCTGCTTCTGTGAGGCTGTTGGGTGTGCTGCCCAGGTGCAGCTTAAACATGAAGGAACGAGCGTGCTCCTCCGGGAGGGGGATGTAGATGCGCTTCtcaaatctgcaaaaaaaaaaaagtcagttttacagtaaaattccaa
>TU187149
CCTGCACTGTGCAGAACTCACACTTACGATTACACACAATGAAAGAAACTGCAGTTTCACAGTTTTCTGTCAAATATAACTGCAGTATAGAGGAAATTACAGAGGAGATTATTATGTATAATGGATCGCGCACATTTAAGTGCTTGGCCCTCTACAGGCCTCTTAGTAATGCCTAATGTGGTCCAACAATGCAAGATAAAGGGCTTCAAAGGGAAATTTTGTAAATATACAAAAGCGTCTGGTCTGAAATAGTTACGGTTATACTACAGCTCAGCTCACATCTCCTCAACGCCATCCTCTCAAAAACGATCTTTACAGACACAAAGAGGCCTAAAAGTATTGTTTTAGAGATCTCCATACCGATAACAtataatatctgtaataatCCCCTCGCTCTACTGGATAATTcgttttcagttcagttttccaGTCCATTTACACGATCACCACCCTCTAAACCATCCGCAGCTTTCATTAATCAAACCCAAAACAAGGCTTTCGCTCCAAGAATGAGCCGAAACATCTCTGAACTTCATAGTAGTGCCATGTACCAGTGAACGTAGTTGTTCATGAGAAAAGTAGCTAAGCTGGAAGTGTAGACGGAGACGGTTACGATATGAGATTCGTCTAAAAGAGAGACACGTATTGAACATTTAGCCTGGGCTTGtagtttaaaagagaaaaaactaaaacagaaaaaaagaaactaaggcttgtatatgaatgaatgaatgaatgaatgaatgaacacacTCATCAGGTTCCCATGTAGCGTCCAGACCAGCTTAAACCTGCCGTCTGCTCAGCCGCCAGCCGAAGGGAAAAAAGTCCAGGAGgaggaaaggggggggggggagaaaaaacaagaaacagaagaaGACTTTACAATCAGGTTGTGTTTGCTTTGGTTCTGGAAGAGACGCCTCCCTCTCAGCCTTCCTGGCCGAAGTCCTCAGTGAACTTCCGTAGCTTCTCCAGGTCCTGCTCGTTCACGGTGGGCTTTGTGTTGGATAGTGATCGTAACATATCCGGCATGCTAACCACAGGCTCCAAGAGCTTATCCCCAGGAACCTCCATCCAAGTCATCTCTACGGCGTTCGGATCACCTGGAGAACAAGGGGTCAAAAGATCATCCAGAATGAGGTTCGGATCATCTCTTGATGGGCCTCGTACCTGTTTAAAGTGTGTAGCAGACTGAACCTTCCTGACTGGCTGCATCAGTGCGTCTCTCACTATAATGCTGATATCGGCTCCTGAGTAGCCCTCAGTCTTCTTCCCCAGAGTGTTGAAGTCTGCTTCTGTGAGGCTGTTGGGTGTGCTGCCCAGGTGCAGCTTAAACATGAAGGAACGAGCGTGCTCCTCCGGGAGGGGGATGTAGATGCGCTTCtcaaatctgcaaaaaaaaaaaagtcagttttacagtaaaattccaa

Function

symbol description
vps4b Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187146 True 1583 lncRNA 0.44 4 1848857 1852968
TU187147 False 1432 lncRNA 0.44 4 1848857 1852813
TU187149 False 1433 lncRNA 0.45 4 1848857 1852813

Neighbor

gene id symbol gene type direction distance location
LOC103043415 LOC108430767 coding downstream 17886 1823226 ~ 1830971 (-)
fyttd1 LOC107709339 coding downstream 39206 1804837 ~ 1809651 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding downstream 78640 1762109 ~ 1770217 (-)
LOC111194260 NA coding downstream 91849 1748858 ~ 1757008 (-)
zbtb41 zbtb41,LOC102777630 coding downstream 131428 1709324 ~ 1717429 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding upstream 70712 1923680 ~ 1965329 (-)
LOC103041268 LOC108430762 coding upstream 116390 1969358 ~ 2070958 (-)
LOC103039403 LOC108430760 coding upstream 381609 2234577 ~ 2292404 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding upstream 449333 2302301 ~ 2312661 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding upstream 517856 2370824 ~ 2390816 (-)
G138325 vps4b non-coding downstream 2347 1845329 ~ 1846510 (-)
G138323 NA non-coding downstream 12144 1827102 ~ 1836713 (-)
G138322 LOC103043726,LOC105899208 non-coding downstream 31719 1811038 ~ 1817138 (-)
G138299 NA non-coding downstream 126679 1721650 ~ 1722178 (-)
G138289 NA non-coding downstream 157905 1688785 ~ 1690952 (-)
G138314 NA non-coding upstream 11119 1864087 ~ 1864524 (-)
G138332 NA non-coding upstream 11700 1864668 ~ 1865751 (-)
G138342 NA non-coding upstream 76155 1929123 ~ 1929509 (-)
G138343 NA non-coding upstream 105735 1958703 ~ 1959724 (-)
G138358 NA non-coding upstream 380574 2233542 ~ 2306381 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 747364 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1131534 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 624727 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1197432 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1242633 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1303782 3156750 ~ 3175353 (-)
G138708 NA other upstream 1979753 3832721 ~ 3833670 (-)

Expression


Co-expression Network