G138358


Basic Information

Item Value
gene id G138358
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2233542 ~ 2306381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187206
gtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttgataaaattaaagaaatcgtcatttttaattgctctcttgttttttttttatccagagctgtatttatagagGAGGGAGATTGTAGAGGATTGAATTATTCAGTTCCATGTATTTAGATAAAAGAAGGTTCCTCATGTGGAACAGTTCGGGCGCAGGTTTATGAGTGTGCCATAACTTTCTGTCGAACTCTATAAGAAGTTCTGTGATTAAGAAGATTTTAATCTCAGCTCGaggacaaaacacacaaacctacaCATCTCACGAGAAGCTTCCTTTCCTTCGGCATTCCACTTTGGTCTTAACACGTTTTTTTTAcggtttcattttcatttttgaagTTGGTATTTTAACCAGACTTGAATTTTAAATATTCctgtaaaataataacttaagTGTACATATCTATTCCATGTTTTAGCATCTCCGTTCCCTCATCTTCTTCTGATTTAGTTTCTTTTTCTGTAAGTATTGTACGATACAGGAGTGTAGATAGAGAGGGAAGTTTGGGGAGAGAACTGGACCATGCTAATCATCATCTCTAGGGGGCGCTGGTCCCTGCGTTTTGGGGAGAAAATGCTTCCTTGACTGTTTGTATCATGCTGTGTCCACTCTGAATGTGGAGGGACATTCAAAACActggaaaataaaatgctttgtgTCTGACTGAGAA
>TU187207
ctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttgataaaattaaagaaatcgtcatttttaattgctctcttgttttttttttatccagagctgtatttatagagGAGGGAGATTGTAGAGGATTGAATTATTCAGTTCCATGTATTTAGATAAAAGAAGGTTCCTCATGTGGAACAGTTCGGGCGCAGGTTTATGAGTGTGCCATAACTTTCTGTCGAACTCTATAAGAAGTTCTGTGATTAAGAAGATTTTAATCTCAGCTCGaggacaaaacacacaaacctacaCATCTCACGAGAAGCTTCCTTTCCTTCGGCATTCCACTTTGGTCTTAACACGTTTTTTTTAcggtttcattttcatttttgaagTTGGTATTTTAACCAGACTTGAATTTTAAATATTCctgtaaaataataacttaagTGTACATATCTATTCCATGTTTTAGCATCTCCGTTCCCTCATCTTCTTCTGATTTAGTTTCTTTTTCTGTAAGTATTGTACGATACAGGAGTGTAGATAGAGAGGGAAGTTTGGGGAGAGAACTGGACCATGCTAATCATCATCTCTAGGGGGCGCTGGTCCCTGCGTTTTGGGGAGAAAATGCTTCCTTGACTGTTTGTATCATGCTGTGTCCACTCTGAATGTGGAGGGACATTCAAAACActggaaaataaaatgctttgtgTCTGACTGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187206 False 730 lncRNA 0.37 2 2233542 2306295
TU187207 True 816 lncRNA 0.38 2 2233542 2306381

Neighbor

gene id symbol gene type direction distance location
LOC103041268 LOC108430762 coding downstream 162584 1969358 ~ 2070958 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding downstream 268213 1923680 ~ 1965329 (-)
LOC103043415 LOC108430767 coding downstream 402571 1823226 ~ 1830971 (-)
fyttd1 LOC107709339 coding downstream 423891 1804837 ~ 1809651 (-)
LOC103044322 pfn2,pfn2l,LOC107681776 coding downstream 463325 1762109 ~ 1770217 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding upstream 64443 2370824 ~ 2390816 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding upstream 100893 2407274 ~ 2421524 (-)
LOC107197650 NA coding upstream 131188 2437569 ~ 2441467 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding upstream 141004 2447385 ~ 2464289 (-)
imp3 imp3,LOC107671714 coding upstream 181629 2488010 ~ 2491153 (-)
G138343 NA non-coding downstream 273818 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 304033 1929123 ~ 1929509 (-)
G138332 NA non-coding downstream 367791 1864668 ~ 1865751 (-)
G138314 NA non-coding downstream 369018 1864087 ~ 1864524 (-)
G138329 vps4b non-coding downstream 380574 1848857 ~ 1852968 (-)
G138366 NA non-coding upstream 7553 2313934 ~ 2314150 (-)
LOC103040233 NA non-coding upstream 86216 2392597 ~ 2394885 (-)
G138400 NA non-coding upstream 201451 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding upstream 216145 2522526 ~ 2529626 (-)
G138399 NA non-coding upstream 247771 2554152 ~ 2570647 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1132049 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1516219 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 171314 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 744019 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 789220 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 850369 3156750 ~ 3175353 (-)
G138708 NA other upstream 1526340 3832721 ~ 3833670 (-)

Expression


Co-expression Network