LOC103040233


Basic Information

Item Value
gene id LOC103040233
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2392597 ~ 2394885 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187230
GCCACGTGGAGATCAGCAGCAGGTTAAGAGGGTGATGTGCAGAGAGTGTAGAATAATGAGGTTATTTCCAGTGTCTGCTCTCCTCACTTTATTATTGCCTAATAGGAGACCTTGAGAAGATGGTTGGTCGGCTGAAGCTGTAGTAATCTTGGTGGTTGGAGTTTGGCCTTTTGGTGGCACCATGTGGACAGCAGAGCATGTTTTTCACGCGAACTGTAGGTCTGGAGAGACTggtgtatataaatgtatgtaatgtgtttgtttggtgtgcattttattatttattttttttttattttacttattacaGTATGCCAAACTTTGGGCctatatgtaaataatttatcCTCTAAAGAAatgcactttattattttttttactcttactGCATATTGAGCTACTGTAATGATTTActgaattaaacatattttatccT
>TU187231
GCCACGTGGAGATCAGCAGCAGGTTAAGAGGGTGATGTGCAGAGAGTGTAGAATAATGAGGTTATTTCCAGTGTCTGCTCTCCTCACTTTATTATTGCCTAATAGGAGACCTTGAGAAGATGGTTGGTCGGCTGAAGCTGTAGTAATCTTGGTGGTTGGAGTTTGGCCTTTTGGTGGCACCATGTGGACAGCAGAGCATGTTTTTCACGCGAACTGTAGGTCTGGAGAGACTggtgtatataaatGTGGATGAACTCAGGAACGTCCTGAATAAATACGTATATGCTCAAGTATTTCTGTGCATTTTATATATGAAATGCATTTCAATAgctttctcagcgtcttgaaggaaggagttcctggaggtgctgaacaatagctgctgcttttccttcatgctgtgaagctccagctcatcccaattaaatcacctcaaattcttacttttttccatgtCTTTAATGTGAATCTAc
>TU187232
GCCACGTGGAGATCAGCAGCAGGTTAAGAGGGTGATGTGCAGAGAGTGTAGAATAATGAGGTTATTTCCAGTGTCTGCTCTCCTCACTTTATTATTGCCTAATAGGAGACCTTGAGAAGATGGTTGGTCGGCTGAAGCTGTAGTAATCTTGGTGGTTGGAGTTTGGCCTTTTGGTGGCACCATGTGGACAGCAGAGCATGTTTTTCACGCGAACTGTGGATGAACTCAGGAACGTCCTGAATAAATACGTATATGCTCAAGTATTTCTGTGCATTTTATATATGAAATGCATTTCAATAgctttctcagcgtcttgaaggaaggagttcctggaggtgctgaacaatagctgctgcttttccttcatgctgtgaagctccagctcatcccaattaaatcacctcaaattcttacttttttccatgtCTTTAATGTGAATCTAc
>XR_002651004.1
ATATCGGCCTTAGTAGTGAGTAGCCACGTGGAGATCAGCAGCAGGTTAAGAGGGTGATGTGCAGAGAGTGTAGAATAATGAGGTTATTTCCAGTGTCTGCTCTCCTCACTTTATTATTGCCTAATAGGAGACCTTGAGAAGATGGTTGGTCGGCTGAAGCTGTAGTAATCTTGGTGGTTGGAGTTTGGCCTTTTGGTGGCACCATGTGGACAGCAGAGCATGTTTTTCACGCGAACTGTAGGTCTGGAGAGACTggtgtatataaatGTGGATGAACTCAGGAACGTCCTGAATAAATACGTATATGCTCAAGTATTTCTGTGCATTTTATATATGAAATGCATTTCAATAgctttctcagcgtcttgaaggaaggagttcctggaggtgctgaacaatagctgctgcttttccttcatgctgtgaagctccagctcatcccaattaaatcacctcaaattcttacttttttccatgtCTTTAATGTGAATCTAccatgtagaaaatacattaataaataataataaataataaaacaataataaggaaaaaaacaaaa
>XR_454875.3
ATATCGGCCTTAGTAGTGAGTAGCCACGTGGAGATCAGCAGCAGGTTAAGAGGGTGATGTGCAGAGAGTGTAGAATAATGAGGTTATTTCCAGTGTCTGCTCTCCTCACTTTATTATTGCCTAATAGGAGACCTTGAGAAGATGGTTGGTCGGCTGAAGCTGTAGTAATCTTGGTGGTTGGAGTTTGGCCTTTTGGTGGCACCATGTGGACAGCAGAGCATGTTTTTCACGCGAACTGTAGGTCTGGAGAGACTggtgtatataaatgtatgtaatgtgtttgtttggtgtgcattttattatttattttttttttattttacttattacaGTATGCCAAACTTTGGGCctatatgtaaataatttatcCTCTAAAGAAatgcactttattattttttttactcttactGCATATTGAGCTACTGTAATGATTTActgaattaaacatattttatccTACAATGTTCTGTACAAATTTTGTTTGTGTACTATGTTCAGTTGCCCAAAATGGTAAATTGACTAACAAATTggtggttattattattttttttttctttactagaACAACTGTGTAATATTTAGaatagttattttgagggctttttttttctccccagtaaAATATTTTCAGCAAAATTTGTTTTCTAATCCACACAATTTAAaggaatttatattttaattgtcttttttttttttttttttttt

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU187230 False 436 lncRNA 0.37 2 2394083 2394863
TU187231 False 473 lncRNA 0.43 3 2392661 2394863
TU187232 False 443 lncRNA 0.43 3 2392661 2394863
XR_002651004.1 False 559 lncRNA 0.39 3 2392597 2394885
XR_454875.3 True 705 lncRNA 0.32 2 2393836 2394885

Neighbor

gene id symbol gene type direction distance location
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 1781 2370824 ~ 2390816 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding downstream 79936 2302301 ~ 2312661 (-)
LOC103039403 LOC108430760 coding downstream 100193 2234577 ~ 2292404 (-)
LOC103041268 LOC108430762 coding downstream 321639 1969358 ~ 2070958 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding downstream 427268 1923680 ~ 1965329 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding upstream 12389 2407274 ~ 2421524 (-)
LOC107197650 NA coding upstream 42684 2437569 ~ 2441467 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding upstream 52500 2447385 ~ 2464289 (-)
imp3 imp3,LOC107671714 coding upstream 93125 2488010 ~ 2491153 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding upstream 120219 2515104 ~ 2520897 (-)
G138366 NA non-coding downstream 78447 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 86216 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 432873 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 463088 1929123 ~ 1929509 (-)
G138332 NA non-coding downstream 526846 1864668 ~ 1865751 (-)
G138400 NA non-coding upstream 112947 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding upstream 127641 2522526 ~ 2529626 (-)
G138399 NA non-coding upstream 159267 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 179435 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 224122 2619007 ~ 2656437 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1291104 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1675274 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 82810 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 655515 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 700716 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 761865 3156750 ~ 3175353 (-)
G138708 NA other upstream 1437836 3832721 ~ 3833670 (-)

Expression


Co-expression Network