LOC103042176 (zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521)


Basic Information

Item Value
gene id LOC103042176
gene name zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2477695 ~ 2486894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187245
TTTGTTCTCCCGCTCGATTGCTAATGTCTGGCTGCGATTCCCATGCAGGACACGAAGCTCCCGCTTCCCATAGCTGACCGCTGACCAGCAAACACGCCACAAAATCCCGTTTTTACTAAAGgtGCTGTTCGCAGTACGATGCCGGCGGTGGTGGCGAGGCAGTGAGGCGATGGGCTGCACCTCGGCCAAGCCGCTATCAGCTGTACCTGGAGAAGAAGAGGGGCGGAGCAAAGCATACAGCAATGGAGATGCCTTCTCTGATGAGTACAAAATGAAAGGCGTTGAGAAGGTGAAGTATGCGCATGGAGAGGAGGAGCGAATGAACACACGCAACCAGGAAAACCTGGAGAAGAGCACACTTTTGCACAAAGGCAAACACAAAGATGTCAGTGGAAACACTAATAAGATAAGcATCCATTCCTCAGAGAGCCAGCAGGAGTTCTTCAGGATGCTGGATGAGAAAATTGAGAAGGGTCGGGACTACTGCTCTGAAGAGGAGGACGTCACATAGCGCGGCTCGTCTCAGCTCGGCCCAGAGGAGAAACCCGTCCTACCCCGGAGTTCCTCACGCCGCCCCTTTCCTCGTCTTCCTGGCCCTCAGAGCACCACGCGTTTTTAACACGATTCAACCCCGTACTCGCCCCTGTTTACATTGAGCACGGCTCGGCCGCTGGGGTTCACAGTTTGGCGTTTGAGTCTTTTGAAGATGTCTGGCAAGGAAAGGAGCGAACGCTCGGCGTGTCGGACGGACGAACCCGGGACACGGAGCGGATTTCCGATGGACTGTCCTTTATCGCCCCTGCCTTACAGCTGCCCCAGCCCATAAATAAGCCTTCTCCAGCTCACAGACTCGAACGGAATCGGAGAGAGAGCCATTGCACAGACTCGCCTGGAATCATTTCGGCCTGCTTTTTCTGTAAAGAGGACACAGGGACCGATGCTGCGTATCTTAGATCTTAGATGATCACGTCTTTTGAGAAtgataagaaagagagagaaatttgAGAGAGATTTAAGGGAGATTTGATGGAGATTTTAGTGAGATTGGTGACTAATGTGTGTCTAATAAAAGGTCACGTGACGTGCTAGCCCCATTCAGATGGTTTGACACTGAACCTCGAAGAGCGAATGGACAGAAAACCTACGGACTATTCCTAACATTCCAGGAGTCTTGTctctttatcttgtttttttatatgttggcaaagtattttttcttttgttcatttttgattTTGTTACACAAGTGCTACACCATTTCTTTATTACTTTTTCCAggtatttctcttttttattttgaagtgtAACACTGCTCAGGACTGTAGTGCTGTTATTTCTGACTGTTAGGGGTTGACGCTTTTGGTTAGCTTCTTCAGGATTGGAGGGGACACATGGACTCATGGACTCATGGACTGTAGACACAGTTGAACGACTGACAGATGGATAATAGTATTTAGGATAACTGTGTTTAGTGGGACCAGTTATAAAAGCATCATTATGATGTCATGTAGTTTCAAATACatatgtttgtgtttctgtagTGCACCAACAGTTTGGTATAATAAGACTGGATTACAGATGTAAGCTTCACCATCGAAGAGGGTGAAACGCAGGTTTTCTGGCAGAATTGTTGTCCAGCAGAAGAGAGAAAGGACTGTGAGGACACTAAGTACATAAAAGTACGAACAGattgagtaaaattaaactGCAGCCCTAAAGACCAAGCCTAGGTAGATAAGATACGGGCCAGGAGGGTTATTTTTCTAGTAGGCAAACGTTTGTTAGTGCAAAATGTTGAAAAGGTAGAATTGAGAGGTAATGAGGTCATGTATTTTGACTAGTTTTGAGATTTGAGAACCTGTAAAAgcaacattaattaatttattgggTTAATTTATGGGAAAATAGCTAGATTGTAGTACATGGGGAAATATgttaattcaatttttttgaaaaaaaaaaaaaaaagcactgatgATAAGAAGAAAGTAGTACAGTCAGTAGCACAACAACTTAGCAGCACACAGATGATTTATTATTAGGTTTTCATGCTGGATAGCTAACCGGCTGCCTCTTTGGATGAGCCAACAGTGCTAGCTGCTAGCTGCTTTAGATAGCTAACAATTAGCTAACAATAACCCATGGTGAGGCTTTTTGTTCAACCCATTTGTGGCTTGCTGGGTCTGCAGGGCTTGGAAAAACATCTAACAGTAATTTTTTACC
>XM_007250626.3
TTCAGACTGGTTAAAACTGGTCAAAGCTTTCCATTTTATTTCGCGAATTAATGTGTTATTATCTATAATACTCCTAAAAGCCTAACTCTGCTTTTAAAGCCTAAGCAAAGCTTCGGGGGGTGAAATAACCCACCGCCCGGGTCTTTGTTCTCCCGCTCGATTGCTAATGTCTGGCTGCGATTCCCATGCAGGACACGAAGCTCCCGCTTCCCATAGCTGACCGCTGACCAGCAAACACGCCACAAAATCCCGTTTTTACTAAAGgtGCTGTTCGCAGTACGATGCCGGCGGTGGTGGCGAGGCAGTGAGGCGATGGGCTGCACCTCGGCCAAGCCGCTATCAGCTGTACCTGGAGAAGAAGAGGGGCGGAGCAAAGCATACAGCAATGGAGATGCCTTCTCTGATGAGTACAAAATGAAAGGCGTTGAGAAGGTGAAGTATGCGCATGGAGAGGAGGAGCGAATGAACACACGCAACCAGGAAAACCTGGAGAAGAGCACACTTTTGCACAAAGGCAAACACAAAGATGTCAGTGGAAACACTAATAAGATAAGcATCCATTCCTCAGAGAGCCAGCAGGAGTTCTTCAGGATGCTGGATGAGAAAATTGAGAAGGGTCGGGACTACTGCTCTGAAGAGGAGGACGTCACATAGCGCGGCTCGTCTCAGCTCGGCCCAGAGGAGAAACCCGTCCTACCCCGGAGTTCCTCACGCCGCCCCTTTCCTCGTCTTCCTGGCCCTCAGAGCACCACGCGTTTTTAACACGATTCAACCCCGTACTCGCCCCTGTTTACATTGAGCACGGCTCGGCCGCTGGGGTTCACAGTTTGGCGTTTGAGTCTTTTGAAGATGTCTGGCAAGGAAAGGAGCGAACGCTCGGCGTGTCGGACGGACGAACCCGGGACACGGAGCGGATTTCCGATGGACTGTCCTTTATCGCCCCTGCCTTACAGCTGCCCCAGCCCATAAATAAGCCTTCTCCAGCTCACAGACTCGAACGGAATCGGAGAGAGAGCCATTGCACAGACTCGCCTGGAATCATTTCGGCCTGCTTTTTCTGTAAAGAGGACACAGGGACCGATGCTGCGTATCTTAGATCTTAGATGATCACGTCTTTTGAGAAtgataagaaagagagagaaatttgAGAGAGATTTAAGGGAGATTTGATGGAGATTTTAGTGAGATTGGTGACTAATGTGTGTCTAATAAAAGGTCACGTGACGTGCTAGCCCCATTCAGATGGTTTGACACTGAACCTCGAAGAGCGAATGGACAGAAAACCTACGGACTATTCCTAACATTCCAGGAGTCTTGTctctttatcttgtttttttatatgttggcaaagtattttttcttttgttcatttttgattTTGTTACACAAGTGCTACACCATTTCTTTATTACTTTTTCCAggtatttctcttttttattttgaagtgtAACACTGCTCAGGACTGTAGTGCTGTTATTTCTGACTGTTAGGGGTTGACGCTTTTGGTTAGCTTCTTCAGGATTGGAGGGGACACATGGACTCATGGACTCATGGACTGTAGACACAGTTGAACGACTGACAGATGGATAATAGTATTTAGGATAACTGTGTTTAGTGGGACCAGTTATAAAAGCATCATTATGATGTCATGTAGTTTCAAATACatatgtttgtgtttctgtagTGCACCAACAGTTTGGTATAATAAGACTGGATTACAGATGTAAGCTTCACCATCGAAGAGGGTGAAACGCAGGTTTTCTGGCAGAATTGTTGTCCAGCAGAAGAGAGAAAGGACTGTGAGGACACTAAGTACATAAAAGTACGAACAGattgagtaaaattaaactGCAGCCCTAAAGACCAAGCCTAGGTAGATAAGATACGGGCCAGGAGGGTTATTTTTCTAGTAGGCAAACGTTTGTTAGTGCAAAATGTTGAAAAGGTAGAATTGAGAGGTAATGAGGTCATGTATTTTGACTAGTTTTGAGATTTGAGAACCTGTAAAAgcaacattaattaatttattgggTTAATTTATGGGAAAATAGCTAGATTGTAGTACATGGGGAAATATgttaattcaatttttttgaaaaaaaaaaaaaaaagcactgatgATAAGAAGAAAGTAGTACAGTCAGTAGCACAACAACTTAGCAGCACACAGATGATTTATTATTAGGTTTTCATGCTGGATAGCTAACCGGCTGCCTCTTTGGATGAGCCAACAGTGCTAGCTGCTAGCTGCTTTAGATAGCTAACAATTAGCTAACAATAACCCATGGTGAGGCTTTTTGTTCAACCCATTTGTGGCTTGCTGGGTCTGCAGGGCTTGGAAAAACATCTAACAGTAATTTTTTACCTCCTGATacctaaaaaaaagaacacagcccTCATACGGGGGacattagttttgtttttttttgtacatttaaaaatgattcttgacatttgggatcagaatgactcaattagtccaaaaacagaatgttagctttctacagtaagtgaataaattagttttaaacacaaaattaacttaaaaaaagaaaagaattctTTTTACCTGGTCTGGTATTTCtatctggactggctgtagaaacgtTTGACTGTGATTCACAACATCTTTCAACAATTTCCAATCAGATGACattaatgttgtcatgtgaccaataGATGATATAGGCAGTGTCTCAAAATGAGGCCAatgatatttaacattttacaaaaaataggATTATAGTGCAAAGTAGcggaaatataatataaatatcctTATATTCCCATATAAGgatgcagggtctcaagaggttaaaataaattagtaaaatatatatatatatattgacttTAAGGTCCTTCTGCTGAACACAATTTCTGTCAGTTAACTTGCAAACCAGtctttaatctgatttaataataataaaaaaactgacttttaggctaaaaagaaacacaccCACATGCCCCTATTCCGTGCAGCTATTTATTCACGTCTTTTAGTTTAGCCCAACCTAGAGCCTGGCTGATTTTTTAAAGCTGATAAATGAATGGGGCTTATTTGCTAGATGATGTTACGCCAAAATTactcaaaataacaaattaaatggGGAGTTTTTCAGACAAGGATtgagcctagtcttggactaaactaaagcattttgaatggagatgtTCCAGCATAAGGAAAATATAAACTGTGTTCAGAATTTACTCCCCATCGAAGAAGTAGTGCACTATTCCCTATATAGTTCACTACCAAACACCCATAATGCATCACAAAATGTAGTGTATAGATGATGTACACTAGAATTTCCAGTGTATAACATAATGCAGTGAAAGTGGTGTTATATTAGATGTTCTCAAAACTGCACAAACAAAGATTTTAAGAAAGTTTGTTGTTAGGTTGATCCAGTGTCAGTTCACTATATAGCAAATGtgatctacag

Function

symbol description
zgc:55943 Orthologous to human C1orf21 (chromosome 1 open reading frame 21).

NR:

description
uncharacterized protein C1orf21 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187245 False 2223 TUCP 0.45 6 2478781 2486751
XM_007250626.3 True 3452 mRNA 0.41 6 2477695 2486894

Neighbor

gene id symbol gene type direction distance location
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 13406 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 36228 2437569 ~ 2441467 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding downstream 56171 2407274 ~ 2421524 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 86879 2370824 ~ 2390816 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding downstream 165034 2302301 ~ 2312661 (-)
imp3 imp3,LOC107671714 coding upstream 1116 2488010 ~ 2491153 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding upstream 28210 2515104 ~ 2520897 (-)
LOC103043419 LOC108430750 coding upstream 45364 2532258 ~ 2542943 (-)
tctex1d1 tctex1d1 coding upstream 77636 2564530 ~ 2567513 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 84512 2571406 ~ 2588323 (-)
LOC103040233 NA non-coding downstream 82810 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 163545 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 171314 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 517971 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 548186 1929123 ~ 1929509 (-)
G138400 NA non-coding upstream 20938 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding upstream 35632 2522526 ~ 2529626 (-)
G138399 NA non-coding upstream 67258 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 87426 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 132113 2619007 ~ 2656437 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1376202 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1760372 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 563506 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 608707 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 669856 3156750 ~ 3175353 (-)
G138708 NA other upstream 1345827 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1360828 3847722 ~ 3861356 (-)

Expression


Co-expression Network