G138399


Basic Information

Item Value
gene id G138399
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2554152 ~ 2570647 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187279
TAAAATTTACACTGACattatatgttattttataattatttaaaattatttcaactaattattataataagttATTCTGTTATGACACTGTTATGGGTCCCATGAacttaaattatgtattaaatatgaattattacCTGCAAATGAACCAGAAAAGCATTATAATGGCTGCAGATTGTTCGAGCGTTGTATTGCGTTTCTCGTTTATTTGTATAAAGTATGAGATTTAATCCTGTGTTGGTTTTGCAGATGACGTGTGCTGTTGTATTTTACAGGAGTTTAGAGTGTTTGTGGTTAAAGCTGTGAGCTGTTAGATGGTATGATGGTATGATGGTATTATATATTGCTCCAGAGATGCTCATTGGTTCAGATGTGGAGTTAATGATCATTTTTCTTGTCGCGCTTCTGAAATGAAACGAGAGACGGATTTCGTGTCAAAGATGCAGCGTTCCTTATCGTTAGATACAAACTGTATAAAAGAGTTTTTTGCgttcgttttgttttttccacaatgtggatttctttcttttttttatttaatttaatttattttttttacattttcctgtAGCAATATTGAAGAataatgtgtataaatgtaAGATAAGAATTGTTATATGTATATCCAAATGGGTATAGAgcttttatgtattattatcattattaagataatgtttttttattttatttttaaatgtttcgtCTTAACATTCATCACTGcactttatttgtatattttatgtgATTCGCACCTGTCGCCTTTAACGTAACTTTATTTATGACTCATTTGCTTGAACACTTTTCATATCTAAAGCCCAGAACTCTTACAGATTACTGTACAACGCTATGGCATATTTTAGACACTGTTGATTCTCGATTAGTCTGGAAAATTAAGAAATTGGTCGTCTCTGTTTAACTTTAACTTGCTTTGTGGTTGCAGTGCTGTTTAGACTACGTGAATCACTACGTTTTAAATGCTTGCTGTTGTTCATTCGCTgcattttgttaaaaaacacCGACACTGTGTTCATTTCTCACGTTTTCAGCATGGGTTCgaaatggaaaagaaaaagaaaggccTCAAATAAGTGCTGTAACACTGAATGCTGTTTATTTCGGTATGAGCAGGACGTTCTTTTTACGTTCTGACCAATCAGGGCTTTGCATTGCATTGCTGAGGAACTGTGTGCTGGACTATGGCTGCCATGAATTATTgactcattattattaatataatgattatttttgcgTTATTTTTTATGTAGGCCTTATTAATGGAAGCGCATTCCCGTCACAAAAAAGGCTTTTCCCACCTTTTCTCAGTGCCaattattttaaccctttcacagctctggggaaaaaaataagaaaacccctaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccatcaaactgaactacttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggagaagaacatgatacAAATGTAcaacaatacatatatataaaa

Function

NR:

description
PREDICTED: leukocyte elastase inhibitor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187279 True 1554 lncRNA 0.33 2 2554152 2570647

Neighbor

gene id symbol gene type direction distance location
LOC103043419 LOC108430750 coding downstream 11209 2532258 ~ 2542943 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding downstream 33255 2515104 ~ 2520897 (-)
imp3 imp3,LOC107671714 coding downstream 62999 2488010 ~ 2491153 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 89863 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 112685 2437569 ~ 2441467 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 759 2571406 ~ 2588323 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding upstream 39063 2609710 ~ 2672633 (-)
LOC103045751 leprot,LOC108430744 coding upstream 113013 2683660 ~ 2687643 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding upstream 146819 2717466 ~ 2731716 (-)
LOC103044426 LOC108430742 coding upstream 163819 2734466 ~ 2741725 (-)
G138400 NA non-coding downstream 22255 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding downstream 24526 2522526 ~ 2529626 (-)
LOC103040233 NA non-coding downstream 159267 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 240002 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 247771 2233542 ~ 2306381 (-)
G138408 NA non-coding upstream 3673 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 48360 2619007 ~ 2656437 (-)
G138414 NA non-coding upstream 109397 2680044 ~ 2748727 (-)
G138415 NA non-coding upstream 138749 2709396 ~ 2745139 (-)
G138445 NA non-coding upstream 195560 2766207 ~ 2767115 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 67258 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1452659 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1836829 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 479753 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 524954 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 586103 3156750 ~ 3175353 (-)
G138708 NA other upstream 1262074 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1277075 3847722 ~ 3861356 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G72074 NA non-coding NC_047598.1 CM018544.1 27403137 ~ 27406819 (-)