G138400


Basic Information

Item Value
gene id G138400
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2507832 ~ 2531897 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187280
gttttttttttatcctgagttccATTTTTAGCAATGCGTTTGTGAATCTGGTCCCTGAAGTTTCTCTACAATGAATCacaatttcacaccaaacccacCCTGAATGTGTTTATCTCAAACACTGAATTATTGCAGACTTTTTGGGAAATTAGTGGATAGACAGAGGCTATGGTTCACACATTCCTCATAAAAGGAGCTCAAAATGTAGAATATTGACCCTTTAATGGAATGCAAGGTGATTTTATTTATGCCTATTTTTACAAAGATAATGTTGCTTTCAGTCTTTCGGCCTGTAGTGTTTATACAAAGTCATGAATGTAAGTTACTGTATATGGCTGTATAAGTGGCTAGTGGGCTGAACTTTGATTCATTTGAAATGCAAACATTtcggctacgttcacattacaagccacgttgctcaaatccgattttttgatCAGATTTTGctcttgatggttcacattcactgtaaatataagtgatctgtatctgtgtgtaatgtgaacgaatctgttcctgaatcgtctcacatgctgcacattgatacctgtataaacgccttcttcttcaccaacaacaaaaaaaccctcatattagagagaggagagactcgtagctttataaagggaaatggatgagttagcagctcatatgtggagcatcttttgctggagtggagagtaaacagctgctctgaagttcatgctcaggtccaggaggtgaaaaaaggacaggtggtttgcttttgctgtttttttgcagctataactgcacagctgcaccaagagatgtgttgtgggtacgagagagaagcacgtagcgctaatgctaatgctaatgcttaaaagcaaaaagacgcatgaattcagatttgatttgaccgttcacattcatgtcgcatgtccatggatcatatatgtatccgatttaggaccacatatgaaagtgactttaatgtgatattaaaaaatctaatttggcacgttcacacagccatgaaaaaatcagatctgagccacattgagcaaaaaaggAGCTTTGAGTCgtttcagcctggtaatgtgaacgtagcctactGACAAATGTTACAACAGTTTGTTGTGTctactgaactgaactgtgtcTGATTGCACTGAATGTTTTGTCTGACCCGTCCAACTCCAGCTAATTAATGTGCCTCAACCCAAGGCCCTGAGGTATATCAAAAATCTCAAACCTCATCAGCATGATTAAAGGGCTATAAATGCCAGAGATACTGTtgcatcatatttataagaaagattttgggtttaaaaaatagattttggAAATGGCGCATTATTAACTTACTAGTGAAGGCATACATACAGGGAATTGCGAGGCAAGAAATAGTCCCTCAGAGAATGTGTTGACATTTTGCCaccatataaaacacagaaGACATGAGTTGGTTCCTTTGTGGGTTtggatattaaataataaaatgtcccTAAGGTTCAGACCTGAAAtataaatgtctgaaataataaCAAATCTCTCATTTATTCCATGAGGTTCACATTAAAATGTATAGGTCCGTAAATGAACAAATTTCATCAGCGTGATTAAAGGGCTATAAATGCCTGAGACACAGTACATGTACAATATCTCTAAAgtcctatctggacaggattagtttctcagggggttcttgggtaattttctttttttatgggggggtcctctgtgattttattcctgtctggatTGACCAagaatgtgtttttctctgtgtttgttcgtcctctgagaaaattacaggctgaattatctactgtttttcgctaaaCTCCTGTAatcgtgctcctccggtaattttagtcccgtccggacgcacatctctgagtttcgtctccacatttccacggagatccatgtaaaaacacaacagcgagtggaaatggaggagctactgaacgcgatgtcatgtgacagagTTTTTTCGATTGCAGTCCAGAAGCAGGAGTTTTAGCACTCTAGAGTAGaagtttgaaatattttttattatttttcacagatgtacccctgagaaactaatcccgtctagATATGGCTTATTTTAGGTTCACAGGTGGATTtagatagtatatatatatagaaaatactCCCAAAGTTCAATAGAAATACAAATCTCTCAGTTTTCTTCCCAAATCCCAACCAGCCTTTAAAAAAACGAATGTCTGAACGTTAAGAACCTGTAGCACCGTACTGAGCAGGAGAACAAAGGCATAGACACACCAGCAGAGAGCGTGTGGTTTGGATACACACCTGAGAGGCTTTTATTCCAGCATTTCAGTCTCATATGAGGTAACATTTAGACATTGTTGTTcttattaaagaaaatgaaCTTTTAAATGGTTACTTTACCAGTTTTTGATAAAGTACATTATGAAGATTTGCATAAAAACCAACACTGACACCACTGTCTATGAACTATCGATTCAttctaaaaattaaaataataacaataaaagagcTTGTTCATATCCATCTAATTTACCATTAAAAACAAGTCTATGCAACGGCAGAGTATTAGTGAGCTGTGGCCAATGAGCATGTCACTACAGTACGTACAGTATGAGCAGCGGCGACTTTGAAGAGAtgtttccttcttttttcttgcATGCAAATGATcatttgcaaataaaaaaatgaattaaaacagaCTGTGatgtgaaatatgtttttttttcttttgaatgcCCGAGTTAAGACCAGTGAGCTCTGATTGTTCACTTTTCCCCCTCTGAGCTTCTAATAAAAGAGCACTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187280 True 2792 lncRNA 0.38 3 2507832 2531897

Neighbor

gene id symbol gene type direction distance location
imp3 imp3,LOC107671714 coding downstream 16679 2488010 ~ 2491153 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 43543 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 66365 2437569 ~ 2441467 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding downstream 86308 2407274 ~ 2421524 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 117016 2370824 ~ 2390816 (-)
LOC103043419 LOC108430750 coding upstream 361 2532258 ~ 2542943 (-)
tctex1d1 tctex1d1 coding upstream 32633 2564530 ~ 2567513 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 39509 2571406 ~ 2588323 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding upstream 77813 2609710 ~ 2672633 (-)
LOC103045751 leprot,LOC108430744 coding upstream 151763 2683660 ~ 2687643 (-)
LOC103040233 NA non-coding downstream 112947 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 193682 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 201451 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 548108 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 578323 1929123 ~ 1929509 (-)
G138399 NA non-coding upstream 22255 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 42423 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 87110 2619007 ~ 2656437 (-)
G138414 NA non-coding upstream 148147 2680044 ~ 2748727 (-)
G138415 NA non-coding upstream 177499 2709396 ~ 2745139 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 20938 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1406339 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1790509 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 518503 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 563704 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 624853 3156750 ~ 3175353 (-)
G138708 NA other upstream 1300824 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1315825 3847722 ~ 3861356 (-)

Expression


Co-expression Network