G138414


Basic Information

Item Value
gene id G138414
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2680044 ~ 2748727 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187297
tctgaccaCTTTTCTTCCAAACTGACACAATTTTCTATCTGaatatatattaagatattttctGTGGGAAATTCAAATGTATATTGTCTATGCAACTGAAAAtacttgtatatttttgtagCTGCTGCTACAATTTCACATTATTTGCTTCATTCGACTGGTAGTAGTTGGCGCCAGTAGTTGATGCCGTCTGACATATGGGGTATATAAAAGAGGctatagttgttgtttttttgtttgttttttttaacccactGTGTACGCCACAATAGTTTTGGAGCTAACTGCATAGCAGACCTGCACATCTCCAGTACAAGCATTTGCAAATGGCTTTCATTTGATTGTGtgtatatactaatataaaaataaagcagtcgtatttaaatgttttgctttttgGTGCTGTCATTTATTAACTTGGTCGTGTCACATGGTCTTCTGGGTTGTAAATTCAGTCGTGAGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187297 True 465 lncRNA 0.35 2 2680044 2748727

Neighbor

gene id symbol gene type direction distance location
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding downstream 7411 2609710 ~ 2672633 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding downstream 91721 2571406 ~ 2588323 (-)
tctex1d1 tctex1d1 coding downstream 112531 2564530 ~ 2567513 (-)
LOC103043419 LOC108430750 coding downstream 137101 2532258 ~ 2542943 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding downstream 159147 2515104 ~ 2520897 (-)
LOC103046677 lrp8,LOC107671705,LOC107719273,LOC107681710,LOC107559340 coding upstream 18464 2767191 ~ 2881863 (-)
LOC103047584 NA coding upstream 174433 2923160 ~ 2927621 (-)
fam159a fam159a,LOC106598084 coding upstream 183036 2931763 ~ 2936532 (-)
scp2 scp2,scp2a coding upstream 234259 2982986 ~ 2996307 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 247827 2996554 ~ 3000039 (-)
G138416 NA non-coding downstream 23607 2619007 ~ 2656437 (-)
G138408 NA non-coding downstream 85090 2574320 ~ 2594954 (-)
G138399 NA non-coding downstream 109397 2554152 ~ 2570647 (-)
G138400 NA non-coding downstream 148147 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding downstream 150418 2522526 ~ 2529626 (-)
G138445 NA non-coding upstream 17480 2766207 ~ 2767115 (-)
G138446 NA non-coding upstream 20272 2768999 ~ 2855818 (-)
G138450 NA non-coding upstream 39648 2788375 ~ 2789109 (-)
G138452 NA non-coding upstream 98831 2847558 ~ 2849202 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 273388 3022115 ~ 3023372 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 193150 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1578551 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1962721 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 301673 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 346874 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 408023 3156750 ~ 3175353 (-)
G138708 NA other upstream 1083994 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1098995 3847722 ~ 3861356 (-)

Expression


Co-expression Network