G138445


Basic Information

Item Value
gene id G138445
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2766207 ~ 2767115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187333
acttaattGAAAACTTAtccttataacgctgtacttcagcaaatgctttactgctccttaacatctgactggtagaatgtatacataaggagcaccggattataagatgcactgttgatttttgggagaattaaaggattttaagtgcacctttaagtgcaaaaaatacagtaattatttttaaagcatcttCTGGGGACCTTTTCATGGTTTAATGTccacagatacacacatactGAAGACTAGAAAGTGTAAGTCAGGTGATTTTTAGAAACAGTGTAATCTCAGAGTTGGCAGCTCTGCTTCAACCACTCTTCTCGTTTGTTAATGGAAAGTTCCAGGTACTAATTTACCCAGTTTATGGGAAACAATAACAACACAAACGTGTGTACCTCATGCGTGGAGAGAAGTGTGCGGTATTGTCTCAGGGAGATGGAacgctgtgtgtgtatgagagagagtgtgtgtgtgtgtgtgtgtgctgtgactGTACATTAATGGCGTAAGAGTGTGTATTGTGACACTGGAAGGCATGAGAACAGCTGTGAAGCATGACGTAAATATTACCTgacgtaaaaaaatataatctaccACCTCTGTCTACTTTATGTTCAAACACACAGGAAGAATGAAGTTGCCACATATTAGCAATATGTTACGTTCTTCTTATTTAAAGAGGAATTCCACCTaattaaatacactttaaataaagaaactgattcataataAATGGTATTACTTTTCTTGGGTGGTCCACTATAGATGGATAAACCCTCTGATTTTAGCtaactccaatgcaaaaaacaaaaatggaagAGGTAGATTGGGAGAagcactgagtgatgtatgggtttaggggcgtgTCAGGAAGAaaagctgattgggctg

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko05030 Cocaine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU187333 True 888 lncRNA 0.38 2 2766207 2767115

Neighbor

gene id symbol gene type direction distance location
LOC103044426 LOC108430742 coding downstream 24482 2734466 ~ 2741725 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding downstream 34491 2717466 ~ 2731716 (-)
LOC103045751 leprot,LOC108430744 coding downstream 78564 2683660 ~ 2687643 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding downstream 93574 2609710 ~ 2672633 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding downstream 177884 2571406 ~ 2588323 (-)
LOC103046677 lrp8,LOC107671705,LOC107719273,LOC107681710,LOC107559340 coding upstream 76 2767191 ~ 2881863 (-)
LOC103047584 NA coding upstream 156045 2923160 ~ 2927621 (-)
fam159a fam159a,LOC106598084 coding upstream 164648 2931763 ~ 2936532 (-)
scp2 scp2,scp2a coding upstream 215871 2982986 ~ 2996307 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 229439 2996554 ~ 3000039 (-)
G138414 NA non-coding downstream 17480 2680044 ~ 2748727 (-)
G138415 NA non-coding downstream 21068 2709396 ~ 2745139 (-)
G138416 NA non-coding downstream 109770 2619007 ~ 2656437 (-)
G138408 NA non-coding downstream 171253 2574320 ~ 2594954 (-)
G138399 NA non-coding downstream 195560 2554152 ~ 2570647 (-)
G138446 NA non-coding upstream 1884 2768999 ~ 2855818 (-)
G138450 NA non-coding upstream 21260 2788375 ~ 2789109 (-)
G138452 NA non-coding upstream 80443 2847558 ~ 2849202 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 255000 3022115 ~ 3023372 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 383806 3150921 ~ 3156055 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 279313 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1664714 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2048884 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 283285 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 328486 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 389635 3156750 ~ 3175353 (-)
G138708 NA other upstream 1065606 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1080607 3847722 ~ 3861356 (-)

Expression


Co-expression Network