G138446


Basic Information

Item Value
gene id G138446
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2768999 ~ 2855818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187334
tatccaaaagcagtgtgtaagactggtggaggaaaaaaaaacagggttattacaccaaatattgatttctgaactcttaaaactttatgaatcttattcatataaaacaatatgaaaTTTATTTGAAGTCAAAGATTAACTTGTTCTAATTTCATTTTGAGGAATTAAATGCTATAACCATTTATTGAAAGCGAATAAGGCTAAACCTGTTGTTATCAGTATCAAGTTATCgatcattataatcattattatcCTTAGTATTATTGCCCAGTTCTTTTTATAGCCCCTccctcctttttctctcttggATTCCCTCACCTCCTCGTTCTTCTcgttcttcttgttcttctcgttttctctctgtccgtctttctgtctttctgttagTCATTCCGCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187334 True 400 lncRNA 0.34 2 2768999 2855818

Neighbor

gene id symbol gene type direction distance location
LOC103044426 LOC108430742 coding downstream 27274 2734466 ~ 2741725 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding downstream 37283 2717466 ~ 2731716 (-)
LOC103045751 leprot,LOC108430744 coding downstream 81356 2683660 ~ 2687643 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding downstream 96366 2609710 ~ 2672633 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding downstream 180676 2571406 ~ 2588323 (-)
LOC103047584 NA coding upstream 67342 2923160 ~ 2927621 (-)
fam159a fam159a,LOC106598084 coding upstream 75945 2931763 ~ 2936532 (-)
scp2 scp2,scp2a coding upstream 127168 2982986 ~ 2996307 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 140736 2996554 ~ 3000039 (-)
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding upstream 144303 3000121 ~ 3006666 (-)
G138445 NA non-coding downstream 1884 2766207 ~ 2767115 (-)
G138414 NA non-coding downstream 20272 2680044 ~ 2748727 (-)
G138415 NA non-coding downstream 23860 2709396 ~ 2745139 (-)
G138416 NA non-coding downstream 112562 2619007 ~ 2656437 (-)
G138408 NA non-coding downstream 174045 2574320 ~ 2594954 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 166297 3022115 ~ 3023372 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 295103 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 338775 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 685153 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 729366 3585184 ~ 3598597 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 282105 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1667506 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2051676 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 194582 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 239783 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 300932 3156750 ~ 3175353 (-)
G138708 NA other upstream 976903 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 991904 3847722 ~ 3861356 (-)

Expression


Co-expression Network