G138452


Basic Information

Item Value
gene id G138452
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2847558 ~ 2849202 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187340
gtgaaactgaaacaactatcattttagtgtgggattttaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctcaaaatattgcaatgcactcaacattatgggttaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccgcatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatctaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtggtataaaaccaggtgtttcagtttcattgtccaacccctgta
>TU187341
gtgaaactgaaacaactatcattttagtgtgggattttaggtttcatggctaaattggagcagcctggtggccaatcttcattaattgcacattattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctcaaaatattgcaatgcactcaacattatgggttaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccgcatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatctaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtggtataaaaccaggtgtttcagtttcattgtccaacccctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187340 True 538 lncRNA 0.44 2 2847558 2849202
TU187341 False 538 lncRNA 0.44 2 2847558 2849202

Neighbor

gene id symbol gene type direction distance location
LOC103044426 LOC108430742 coding downstream 105833 2734466 ~ 2741725 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding downstream 115842 2717466 ~ 2731716 (-)
LOC103045751 leprot,LOC108430744 coding downstream 159915 2683660 ~ 2687643 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding downstream 174925 2609710 ~ 2672633 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding downstream 259235 2571406 ~ 2588323 (-)
LOC103047584 NA coding upstream 73958 2923160 ~ 2927621 (-)
fam159a fam159a,LOC106598084 coding upstream 82561 2931763 ~ 2936532 (-)
scp2 scp2,scp2a coding upstream 133784 2982986 ~ 2996307 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 147352 2996554 ~ 3000039 (-)
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding upstream 150919 3000121 ~ 3006666 (-)
G138450 NA non-coding downstream 58449 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 80443 2766207 ~ 2767115 (-)
G138414 NA non-coding downstream 98831 2680044 ~ 2748727 (-)
G138415 NA non-coding downstream 102419 2709396 ~ 2745139 (-)
G138416 NA non-coding downstream 191121 2619007 ~ 2656437 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 172913 3022115 ~ 3023372 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 301719 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 345391 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 691769 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 735982 3585184 ~ 3598597 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 360664 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1746065 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2130235 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 201198 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 246399 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 307548 3156750 ~ 3175353 (-)
G138708 NA other upstream 983519 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 998520 3847722 ~ 3861356 (-)

Expression


Co-expression Network