LOC103025790


Basic Information

Item Value
gene id LOC103025790
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3095601 ~ 3114686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187408
GGCGGAGTTCAGCTGTTTGACAGACGTCCCGAGAAGATGGTGGCAAAACAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACACAGAGAGGAAACGTCAAATCGACGaaaaacaaTGTGGAAGATAAAGTGTCAGTGGGACCTTGGCTTCTGGCTCTCTTCGTCTTCGTGGTGTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGAATGGGAATGTAAGAAGGCGTACGATTCCACCGTCCGACCACAACTCAGCATTTCTGGCCTTCACTTAGCTTCCTGTTCCTGAAGTTCTGCAGCAGAGAAATCTCCAGAATCCTTCAGTTCATTTAAGTGTAGATTACTGTAATCATCATGTTCCTTCTTTCTGAGGTGAACCAACATGTCTTTCCTCTTCTGTGCCTTATTACGCTGAGGAGAAACCTGCGAGCTATAAACTGCAGCCCGCGATCAATTCCAATGTCAGTCAATTTGTGctaaatgtagaaataatgtAATGTGTCTTAGTGTGATTTGTCTCAGCTTATTTTAACATTCCTCTGAATTATGCTGAAATGATTGATTGTGTTGTAATGTTGTTTTTAtaaagggggtggggggggggggtcctgaTTTCTTGCTTTCCAGTAATTAAACTGACCAAATCTTGGAGACTTTACACAAGCTGGAGCTTCTCATGCAAACACTGGCAGCagtcctgtaaaaaaaacagacagaagaaAGAGCTAACGTTTCAGATTGTCCTACAGGATCGATTTACTGCCATTCTGATTTGTTTGATTACAAAAGTATTTTGTCATTTCTAATCCTTTCTAATTCTCTAATGCTTACAGCATTTAAAACCACTGCCTCTATACATTTCTGACAAGTGTTTTGTCTCATGTACGGTTCTCAGGCACATATTGCTCTTTGGTGAATGCCATTAGGGGCTTTGAAATCTCAGCATTCTCAGACTTGGACTAATGCCTCTAATGGACTGTGGAACTGAATGTTCGAACTGAAAATAAATTTTACGGAGAGCAAGTATACGTGTCCGTGTTTTTTGGCCAATAGAATAAGTGGTGTTGCAACATTCTGGAcacttaccatattttttggactataaggcgcaccaaatTGTAAGTCgcaa
>TU187409
GGCGGAGTTCAGCTGTTTGACAGACGTCCCGAGAAGATGGTGGCAAAACAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACACAGAGAGGAAACGTCAAATCGACGaaaaacaaTGTGGAAGATAAAGTGTCAGTGGGACCTTGGCTTCTGGCTCTCTTCGTCTTCGTGGTGTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGAATGGGAATGTAAGAAGGCGTACGATTCCACCGTCCGACCACAACTCAGCATTTCTGGCCTTCACTTAGCTTCCTGTTCCTGAAGTTCTGCAGCAGAGAAATCTCCAGAATCCTTCAGTTCATTTAAGTGTAGATTACTGTAATCATCATGTTCCTTCTTTCTGAGGTGAACCAACATGTCTTTCCTCTTCTGTGCCTTATTACGCTGAGGAGAAACCTGCGAGCTATAAACTGCAGCCCGCGATCAATTCCAATGTCAGTCAATTTGTGctaaatgtagaaataatgtAATGTGTCTTAGTGTGATTTGTCTCAGCTTATTTTAACATTCCTCTGAATTATGCTGAAATGATTGATTGTGTTGTAATGTTGTTTTTAtaaagggggggggggggg
>XM_007250659.3
AGACGGACTTTGGGATGGATATTTTTGATGAACCTGGCAACCCTTCTAAGTACTCTAGACTGAAGAGCTACGGGTTTCCGGTGGGGCGGAGTTCAGCTGTTTGAGTACGTAGACATAAACCCAGATAACTTTCTCCCGTTTCTTTCAGCTCTGAAACTTATCGACAGGTTTTAATCTCCTAACATTCAGCAGACGTCCCGAGAAGATGGTGGCAAAACAGAGAATCCGCATGGCCAACGAGAAGCACAGCAAAAACATCACACAGAGAGGAAACGTCAAATCGACGaaaaacaaTGTGGAAGATAAAGTGTCAGTGGGACCTTGGCTTCTGGCTCTCTTCGTCTTCGTGGTGTGTGGATCAGCCATCTTCCAGATCATCCAGAGCATCAGAATGGGAATGTAAGAAGGCGTACGATTCCACCGTCCGACCACAACTCAGCATTTCTGGCCTTCACTTAGCTTCCTGTTCCTGAAGTTCTGCAGCAGAGAAATCTCCAGAATCCTTCAGTTCATTTAAGTGTAGATTACTGTAATCATCATGTTCCTTCTTTCTGAGGTGAACCAACATGTCTTTCCTCTTCTGTGCCTTATTACGCTGAGGAGAAACCTGCGAGCTATAAACTGCAGCCCGCGATCAATTCCAATGTCAGTCAATTTGTGctaaatgtagaaataatgtAATGTGTCTTAGTGTGATTTGTCTCAGCTTATTTTAACATTCCTCTGAATTATGCTGAAATGATTGATTGTGTTGTAATGTTGTTTTTAtaaagggggtggggggggggggtcctgaTTTCTTGCTTTCCAGTAATTAAACTGACCAAATCTTGGAGACTTTACACAAGCTGGAGCTTCTCATGCAAACACTGGCAGCagtcctgtaaaaaaaacagacagaagaaAGAGCTAACGTTTCAGATTGTCCTACAGGATCGATTTACTGCCATTCTGATTTGTTTGATTACAAAAGTATTTTGTCATTTCTAATCCTTTCTAATTCTCTAATGCTTACAGCATTTAAAACCACTGCCTCTATACATTTCTGACAAGTGTTTTGTCTCATGTACGGTTCTCAGGCACATATTGCTCTTTGGTGAATGCCATTAGGGGCTTTGAAATCTCAGCATTCTCAGACTTGGACTAATGCCTCTAATGGACTGTGGAACTGAATGTTCGAACTGAAAATAAATTTTACGGAGAGCAAG

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187408 False 1144 lncRNA 0.42 4 3110297 3114602
TU187409 False 617 lncRNA 0.44 5 3095601 3114602
XM_007250659.3 True 1208 mRNA 0.42 3 3110402 3114686

Neighbor

gene id symbol gene type direction distance location
LOC111194268 LOC108430728 coding downstream 9126 3084742 ~ 3086475 (-)
LOC103045647 NA coding downstream 13552 3071150 ~ 3082049 (-)
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding downstream 61533 3029732 ~ 3034068 (-)
LOC103023383 LOC108430736,LOC108267617 coding downstream 66507 3025242 ~ 3029094 (-)
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding downstream 88935 3000121 ~ 3006666 (-)
LOC107197653 NA coding upstream 5293 3119979 ~ 3150877 (-)
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding upstream 62980 3177666 ~ 3184535 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 266889 3381575 ~ 3416309 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding upstream 365282 3479968 ~ 3503822 (-)
usp33 usp33,LOC107708728,LOC107751869 coding upstream 389890 3504576 ~ 3535405 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 72229 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 239783 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 246399 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 306492 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 328486 2766207 ~ 2767115 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 36235 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 79907 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 426285 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 470498 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 484577 3599263 ~ 3599510 (-)
LOC103045355 LOC108430731 other downstream 32842 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 608707 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1994108 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2378278 695903 ~ 717323 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 42064 3156750 ~ 3175353 (-)
G138708 NA other upstream 718035 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 733036 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 1216185 4330871 ~ 4338197 (-)
G139074 NA other upstream 2161420 5276106 ~ 5276468 (-)

Expression


Co-expression Network