G138563 (cope,LOC107690966,LOC107709006)


Basic Information

Item Value
gene id G138563
gene name cope,LOC107690966,LOC107709006
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3194593 ~ 3200110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187521
actgacctcgGGAGGCTTGCCCAGGTGTTGTGTCAACACAATCAGGTTGACGAGTGTCTCAGGGTGGCCGCTGTCTTTGTCCAGCGCGTCCTGCAGGACAGACTCAGCCTCGTCCCATTTGTTCTGGGCCATGTGGCAGGCAGCCTGACCATTCAGCAAGATTAGAGTGGGAGAGTATTTATCAGACATCTCCTGGAAGATGTAGAAAGCGTCCTGCAGCTTCTCTCCTCCCACAGAAAGGTTGACCCAGGCAGTGGCCAGCTGAGTTAGTGTAGCATCTTCATCCTGTTCCTGCATCTTCTTTAGCTCTTTCCTTGCCATGTCAACTCTGTCCAGCTTCAGAAGTACCTGGACGGTCATCGCCATgCACTCGAGGCTCTCTCCCTGGTGAAGTGTTCGCAGGGCAGCGTCTGTGTTCATCTCGTGCAGGTAGATGGAGGCGGCCATCAGCAGGAAGGTGGTGTTTGAGACGTCCACACTTTGACTCATCTTCTTATCCAGCTCAGCCACGATTGAATCCCTTTTGCCCTCATTAGACAGATAGTCTGCAAACATACGGACAGCCTTCAGATCCTCAGAGGAACTCTGCTTTATGTCATCCAGCACCACTCCATACTTTCTCTGTGCTATGTACGCCCTGTAGAGGAAAATGTCCTTCTCCAACTCCTTGTCTGGTCCTGAAGCCTTCACTTTCTGAGCTTCATTAATACAGTGCTGATAGCTGCCGATATAAAAGGCGTTTTTCACGTCGAATAACTCGTCCACTTCTCCCTGCTGCGCCGCCATGATGCTTCTGAACACC
>TU187522
TCAAGCTCACTGgacaaataacacatttttggGAGACACACAACGCATCACATAATAACAGATTTATTAAACAAGTGTACAGGAATGCTTAAGGAAATTATTAAAGAGTTTTAACATattgcaaacaataaaaaaacaaaccatgtGTTATAGTGATCACTGCTTTCAGCCCATATCAGAAGAGAGAGAACGACGCCTGGTTTTCAGGCACTGGGAGCGTACTGCATGGCGAGTCTGTCGAATTCGTTCTCCTTAATGAGATAATCCTTAATGAAAGGATGAGATTTGTGGGCATCTTTCAGCTGGGATAAGTAGCGATTTGTAACctcgGGAGGCTTGCCCAGGTGTTGTGTCAACACAATCAGGTTGACGAGTGTCTCAGGGTGGCCGCTGTCTTTGTCCAGCGCGTCCTGCAGGACAGACTCAGCCTCGTCCCATTTGTTCTGGGCCATGTGGCAGGCAGCCTGACCATTCAGCAAGATTAGAGTGGGAGAGTATTTATCAGACATCTCCTGGAAGATGTAGAAAGCGTCCTGCAGCTTCTCTCCTCCCTGTCGAACAAGGAAAACACAATAAGAGACACGAGAAAGAAGCAGCATTAAACAGAACGG

Function

symbol description
cope Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

NR:

description
PREDICTED: coatomer subunit epsilon

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187521 True 802 lncRNA 0.52 8 3194593 3198484
TU187522 False 611 lncRNA 0.45 4 3197707 3200110

Neighbor

gene id symbol gene type direction distance location
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding downstream 10058 3177666 ~ 3184535 (-)
LOC107197653 NA coding downstream 43716 3119979 ~ 3150877 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding downstream 94703 3089391 ~ 3099890 (-)
LOC111194268 LOC108430728 coding downstream 108118 3084742 ~ 3086475 (-)
LOC103045647 NA coding downstream 112544 3071150 ~ 3082049 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 181465 3381575 ~ 3416309 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding upstream 279858 3479968 ~ 3503822 (-)
usp33 usp33,LOC107708728,LOC107751869 coding upstream 304466 3504576 ~ 3535405 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding upstream 522627 3722737 ~ 3759982 (-)
LOC103031615 NA coding upstream 593218 3793328 ~ 3796794 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding downstream 38538 3150921 ~ 3156055 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 171221 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 338775 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 345391 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 405484 2788375 ~ 2789109 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 340861 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 385074 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 399153 3599263 ~ 3599510 (-)
G138659 NA non-coding upstream 415683 3615793 ~ 3616014 (-)
G138662 NA non-coding upstream 463666 3663776 ~ 3664008 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 19240 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 79907 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 131834 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 707699 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2093100 1050532 ~ 1101493 (-)
G138708 NA other upstream 632611 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 647612 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 1130761 4330871 ~ 4338197 (-)
G139074 NA other upstream 2075996 5276106 ~ 5276468 (-)
G139105 NA other upstream 2129968 5330078 ~ 5330805 (-)

Expression


Co-expression Network