G138651 (LOC103030773,LOC108437505,LOC108267627,LOC107558181)


Basic Information

Item Value
gene id G138651
gene name LOC103030773,LOC108437505,LOC108267627,LOC107558181
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3585184 ~ 3598597 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187640
AGTGTTACACATTTACTTGCTATAACAGAACAATTTTAAGCACATCCAGTCATATAGCCAATACACATATGGTCTGCAGTGCACTTTCAGGCTTTCTAAAACCAGAAATAATCACAGCTGTACCTCTGATTCAGAGAGGCTACTTCACCTGTTTTTACTTATGGAGATATGAGGTATGGCGGGCAGTTGGACTGCTGGGTAATAAGTCGCACTCTGGTGCCACCTACaggtaataattataataaaatacatctaCATTTAAAGTGGAAaagaagaaagtaaaatataaccAAAAATAAAGATTCAATAAgctatgtaaatatgtataaaatatataaattgaatatttgtattaaatgtacaaaaaaaaatatttttaaaatcagtcTTTGGTGTGTAACAGTGCTTCTCAGTCCTGGTTCTGGTTACCTCCTCTTCCTTGATCTTAACAAATCAGCTCATTAAAACAAGCACTTTCAGAGTGTTAGTGGATAAGATAAAGCAGGGAAacctctaaaatgtgcagggcagcgGGGGTcaccaggaccaggattgagaaacTCAATCAGTATCGAGTGATGGTGAATATTAAACTACAAAAACGTTTCAGCAAATCCTGAAACCTGGTGGATTCCTCTTCCCTTTCTTTTCAGAGCGGTGAAGATAAAAGCCGCTTTAACTCAGTGTTTGTTGTTACTGTTCTCAAAGAACATGAAGTCAATGAGAAATAAGGCCCCGAAAAGAACAGCCTTGATCTTCACGTCCAGGTCCATGGGGAACTTAATGCCGAAGTTGTCAGCATCTGTGAAGGCTTCCTGTAGCATTCCAGTCCACTGCTTACAGATCCTGCCCACCTGTGTGCTCTCATCCATGGACATTACCTCAAAATTCACATCTGAACAGCAGTTACAAGCACAGAACGGACCCTGGATCCTCAGAACATCCTCTCTCTTCTCGTTCTGTACGATGAATTTGGGTAAGAACGGGTGCCACTTCTGAATCACATATCCAATCGGGTTTCCTGGAGGAGCCTGAACCTCAAGCTCTTGCAGGCAGCAGGGGCAACAGCAGCTAGCGCATCTCAGAGGTCGTGTGAGGGTCATCACCTCCTGGCCCATGTTGTCCTGCACATGGAGGACGAAGGAGCGCATGGGTCCACAGCACTGTCTGGTACAGCAGTCGTTCTCCTCCGCCACATAAAACACCTGCTGCCCCAGTGTGTTCTTCACCAGATACTTATTATTGGTCTCCCAGCCTAAAATAACCTCAGCCAGCTCTATTTTCTGATGGACGAGGAGCTGGTCGATCTGGGTCAGGTACTCCAGTCCTGGGGGGCAGCCGACTGGCCTCTGAGGGACAGGCATCATTGCAGGAGCCTGGGGCGGTACAtagcCTGGTGGAGTTGGTGTTTGACCGTAATTGGGATTAGGAAAGGCATTTTTTGTTTGGAGATCGATGGAGGTAACAGCTGAAGCCATGGTGTACCACTACAGTTCACTTCCTCAGCGATGTGACCGCGACGACAATGCCCAGAGTATCCAGGTAAGAGTAAGTTACACAAAACGTCTCTAAACGTCGAGTTAGCGTTAATTAGGTAacttaaatagttaaatcagaaCAGGTAGAAGCTTAACGTTAATGCTACCCAAAATATATAGTTAATCTAGTTAACTAGTTGTAgctatttatgtaaaataatgtgAACGTTATATATTAAGAGACAGCTCGTATGATCTCCCTACGTGCAGCTAACTAAGCTCATACTGAT

Function

NR:

description
phospholipid scramblase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187640 True 1768 lncRNA 0.43 10 3585184 3598597

Neighbor

gene id symbol gene type direction distance location
usp33 usp33,LOC107708728,LOC107751869 coding downstream 49779 3504576 ~ 3535405 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding downstream 81362 3479968 ~ 3503822 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 168875 3381575 ~ 3416309 (-)
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding downstream 400649 3177666 ~ 3184535 (-)
LOC107197653 NA coding downstream 434307 3119979 ~ 3150877 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding upstream 124140 3722737 ~ 3759982 (-)
LOC103031615 NA coding upstream 194731 3793328 ~ 3796794 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding upstream 376213 3974810 ~ 3990263 (-)
LOC103021848 LOC103021848,LOC108437503 coding upstream 404228 4002825 ~ 4016139 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 470181 4068778 ~ 4074278 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding downstream 16530 3540971 ~ 3568654 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding downstream 385074 3194593 ~ 3200110 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding downstream 429129 3150921 ~ 3156055 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 561812 3022115 ~ 3023372 (-)
G138452 NA non-coding downstream 735982 2847558 ~ 2849202 (-)
G138657 NA non-coding upstream 666 3599263 ~ 3599510 (-)
G138659 NA non-coding upstream 17196 3615793 ~ 3616014 (-)
G138662 NA non-coding upstream 65179 3663776 ~ 3664008 (-)
G138706 NA non-coding upstream 232070 3830667 ~ 3831292 (-)
G138716 NA non-coding upstream 242802 3841399 ~ 3841780 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 409831 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 470498 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 522425 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 1098290 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2483691 1050532 ~ 1101493 (-)
G138708 NA other upstream 234124 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 249125 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 732274 4330871 ~ 4338197 (-)
G139074 NA other upstream 1677509 5276106 ~ 5276468 (-)
G139105 NA other upstream 1731481 5330078 ~ 5330805 (-)

Expression


Co-expression Network