G138837


Basic Information

Item Value
gene id G138837
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4179824 ~ 4234182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU187924
aattagaatattacataagaccaattggtacttttggcagtgtgtgccaagtcctgctggaaaatgaaaggtgCACCTCTATAaaacagagggaagcatgaagtgctgtaagactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctacattaaaccatcactgatcatcagtaaattttacattttatctaggaaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaactttCACAATGAATAATGATTtgtagatgtggatttcattttccagcaggacttggcacactgcccacactgctaaaagtaccaattggttatataaaagttatataatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187924 True 378 lncRNA 0.37 3 4179824 4234182

Neighbor

gene id symbol gene type direction distance location
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 37206 4128532 ~ 4142618 (-)
LOC111194272 LOC108437516,LOC108267691,LOC107715522,LOC107681815,LOC105889505 coding downstream 57831 4105554 ~ 4121993 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding downstream 105546 4068778 ~ 4074278 (-)
LOC103021848 LOC103021848,LOC108437503 coding downstream 163685 4002825 ~ 4016139 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding downstream 189561 3974810 ~ 3990263 (-)
LOC103024655 NA coding upstream 2487 4236669 ~ 4269902 (-)
LOC103024348 NA coding upstream 9284 4243466 ~ 4245836 (-)
LOC103024967 LOC108437498 coding upstream 47345 4281527 ~ 4289548 (-)
LOC103025293 NA coding upstream 56230 4290412 ~ 4304086 (-)
LOC111194273 NA coding upstream 115608 4349790 ~ 4360297 (-)
G138822 NA non-coding downstream 4228 4172979 ~ 4175596 (-)
G138834 NA non-coding downstream 17344 4162212 ~ 4162480 (-)
G138830 NA non-coding downstream 28689 4141468 ~ 4151135 (-)
G138817 dcun1d1,LOC107656862,LOC107568628,LOC107722250,LOC105889496,LOC103032878,LOC107681826,LOC107578399 non-coding downstream 102358 4075500 ~ 4077466 (-)
G138815 NA non-coding downstream 128593 4050167 ~ 4051231 (-)
G138910 NA non-coding upstream 98212 4332394 ~ 4351126 (-)
G138913 NA non-coding upstream 161908 4396090 ~ 4396932 (-)
G138919 NA non-coding upstream 186682 4420864 ~ 4421595 (-)
G139011 NA non-coding upstream 472031 4706213 ~ 4707525 (-)
LOC111194275 NA non-coding upstream 518391 4752573 ~ 4754327 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 318468 3847722 ~ 3861356 (-)
G138708 NA other downstream 346154 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1004471 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1065138 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 1117065 3050400 ~ 3062759 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 96689 4330871 ~ 4338197 (-)
G139074 NA other upstream 1041924 5276106 ~ 5276468 (-)
G139105 NA other upstream 1095896 5330078 ~ 5330805 (-)
G139489 NA other upstream 1774871 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1788427 6022609 ~ 6054733 (-)

Expression


Co-expression Network