G141099


Basic Information

Item Value
gene id G141099
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12814867 ~ 12816236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191040
attcgggcagagaatctaagctctaaaatagaaagcagcagcaccacaaaaaccggagcagctaaaaagagcttaacgtccttaattcggaacttgggttgtccacggtaatcactgaattgattagagcacgcaaatcgtcacaattgtgcctcacttcaccacgccaaaccacaggcacagcggccagaagctcaagttcaccggacagaggaggggttaaccagggcaaagcgaaataaaaaaaaaaagttcatagagctgctaaagtaacgtgcagtaacggggtgtcggaaatggtaacggcgttatagttacagtcatagtaattagttagattactcgttactgaaaaaaagtaacggcgttagttgcgctgttagatattaaatgaaacgatgagcagaattttctgttttgtcgggttctactttagaaccccctccagacttttctgataaaagctcattttatcctgaacctataaagtccgcgctcttcagctttctcaactcattttccgctcacgcaccgaacctccagtacagctgatgagacgcgtttctctggctaaggagctcatttgaagaagaaaaaaaacagataaagctatatttaaattacagcacctgtctgtttttgcattatttataattttattcttaatttaaacgtcacccatttttgtaaaataatagctgcagccctaatgtgaacattttataacattgtcctcccatgtccattcgttttcaactgcatggagttgaagaagaaatgagctttgccgttttggagtaactatctaaagttgtcacattatggaagtcttcttgcactctgttaaacatattaaaatgaataattaatagactaacagactgcaacaagtcatacatttgttaattagtaggcccctacagtaaattttatataatagccaacataatatttctactataaacatgaatatatagtgtatatagaacatatgttatataatgaataaaataaaatgttatggataatacaatctaaataaaattaatattttttttattaacatatagtgatatagtaacattaaagtcactataaaatgctaaccttattttcaataaattgtgtgaagtttacaactgttgttcctcctcttactagtatgattttaagcatgccaaataagtataatacgatagcatatcggccctaaaaatcggcaggtcacatcggccatcggctgactctgaccactaatgatcggtatcggcatcggccttagaaaaacccatatcggtcggtctctaaTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191040 True 1310 lncRNA 0.36 2 12814867 12816236

Neighbor

gene id symbol gene type direction distance location
LOC103030385 LOC108437225 coding upstream 82499 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 350220 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 642401 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 887119 11866450 ~ 11927748 (+)
e2f5 LOC108437220,LOC108268108 coding upstream 1019023 11784077 ~ 11795844 (+)
LOC103030306 NA coding downstream 577141 13393377 ~ 13437203 (+)
rgs20 rgs20,LOC108440656 coding downstream 980158 13796394 ~ 13846951 (+)
LOC103040707 NA coding downstream 1050051 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 1084672 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 1122049 13938285 ~ 14142611 (+)
G141087 NA non-coding upstream 29130 12738242 ~ 12785737 (+)
G141075 NA non-coding upstream 202777 12611298 ~ 12612090 (+)
G141074 NA non-coding upstream 205365 12608646 ~ 12609502 (+)
G141046 NA non-coding upstream 328296 12486280 ~ 12486571 (+)
G140957 NA non-coding upstream 345745 12468336 ~ 12469122 (+)
G141178 NA non-coding downstream 168631 12984867 ~ 12990434 (+)
G141185 NA non-coding downstream 214536 13030772 ~ 13033593 (+)
G141188 NA non-coding downstream 224554 13040790 ~ 13041271 (+)
G141189 NA non-coding downstream 282850 13099086 ~ 13115018 (+)
G141195 NA non-coding downstream 320530 13136766 ~ 13212354 (+)
G141086 NA other upstream 71414 12741473 ~ 12743453 (+)
G140930 NA other upstream 433313 12378996 ~ 12381554 (+)
G140931 NA other upstream 574242 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 1336127 11455485 ~ 11478740 (+)
G140659 NA other upstream 1431362 11380098 ~ 11383505 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other downstream 26562 12842798 ~ 12860327 (+)
G141361 tcea1 other downstream 1039367 13855603 ~ 13858605 (+)
G141410 NA other downstream 1364429 14180665 ~ 14200998 (+)
G141495 NA other downstream 1711904 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 1962945 14779181 ~ 14784812 (+)

Expression


Co-expression Network