fyttd1 (LOC107709339)


Basic Information

Item Value
gene id fyttd1
gene name LOC107709339
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1804837 ~ 1809651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007229168.3
GCAAATAAACCCTTTCGAGCGCATGCGCAGCAGCGTCACAGCGCGggacagttagctagctagttgttaGCCATTTGATTTGGTTTAAATTAGagcgttttattttattttcttacattaaacacaaaacagcGCGATAATGAACCCGTCCAGCTTCACTCCGGGCGCGAGTGCAGAAGGGCCGGATAAAGTAGACATGTCTCTCGATGACATAATTCGATTGAATAAGAAGCAGAAGCAGCTTCAGAGCCACAAGTCTGCCCTCAAAAAGCACAAGTTGGCAGTGAGGGGCCGTTTAAACCAGGGAACGAGAATGACCACACCGCTACAGAGGGgaGGAGGAGCGGGTAAACTGTTTGTCCGTGGCCAGAAGTTTGTACCCCCACCTGGGGGAAAGCGTCGCGGGCAGGGGGTCATCACTGGCCTGGCAGCGAGGAAAACAGCTCTCCTAAAAGGCGTCAGTCCACTAAACCGGCCAGCACTGAATCGAATGCCTCGAAACAGACGGACACCCAGTCGACTTGGCAACGGCAGAGTAACTGTAAACCACTCAGCATTTCCTCAGAGAACAAGGCCGTTTGTTGCGCAGCGTGAATCTCAGCGCAGGCAGACGTACACACAGAGGTGGCCATACACACAGCGGGACACACAGAAAGCGCCGCCCCACATGACCCGCAGACCCTTCCAGCTCCACAGGAAATGGAATGGTCCTCCAGTTCATGAGTCACATAGAGAGGCACGCCAGGCCACCTTCCTGTCCAGAAGAGGCCTAAAGGTCCAAACTCATGTGCAGAAAACAGCCCCatcaacacagagaacacaaagGACCCGGCCGTGGCGCACTCCTCAGAACAACACCGGCATTCTCACAGTGTCAATTGACAACCCCACTGCCAGAACTCAGCCTGAGCCGGCCCACTCGTGGTCTCTCCACCCCTCTACCCCAGCCCCTCCCCCTACCCCTGCAGAGGAGCCTGAGAGAAAACCACCTAAAGGAGTTGCTTTACAGTTTGACATCAACAGTGTGGGAAAACAGaccACGATGACACTGAACGAGCGATTCCGGATTCTGAAGGACAAACGCATCGCAGCATCGAAGCACAGCAGCAAAGGAGGACGATTCGTCACTGTTGGCTAACTACGAGCCCTACGGACCAATAAGAGAGACTTACTGAGGTCACATGTTTCTTTTGACCCAATCTCAGAGCAGTAAACTGACCCAAACCCCGcccagacagagagacagagcggcCACGTTAGCTCCAGCGCTCCGGACCGGCTAATGGAGCGCTGTTTATGAGCGATGTTGTGTTTAATTTCCTGGGCTGAAGAGATGCTTTGAAACCAGGAGGCCCTGACGCTCTGATTCAACAATGTTTTTGAGCCTTTTCATGTTTGTATTTGGCTGCAGTTCCTTCTTTTCTCAAAGCCAGTGTTCCTGTGTTTGGGTTATATTTTGTGTTCCCTGAGCAACTTTTACATCAGTTAGATCAGATGAtaaagtttagttttgttttttatgaagAGGGGAGCTGCTCGGGGTCGATGAAGAAGAGACGGGTGCTTTGTTGAAAAGAGAAttttggttgttgttttttttttcttgtccaacagaagtgttttaaacatttgttttataatgtttcaTTAAATAAATGGAATATTGTCTTTCCTGA
>XM_022677777.1
AATAAACCCTTTCGAGCGCATGCGCAGCAGCGTCACAGCGCGggacagttagctagctagttgttaGCCATTTGATTTGGTTTAAATTAGagcgttttattttattttcttacattaaacacaaaacagcGCGATAATGAACCCGTCCAGCTTCACTCCGGGCGCGAGTGCAGAAGGGCCGGATAAAGTAGACATGTCTCTCGATGACATAATTCGATTGAATAAGAAGCAGAAGCAGCTTCAGAGCCACAAGTCTGCCCTCAAAAAGCACAAGTTGGCAGTGAGGGGCCGTTTAAACCAGGGAACGAGAATGACCACACCGCTACAGAGGGgaGGAGGAGCGGGTAAACTGTTTGTCCGTGGCCAGAAGTTTGTACCCCCACCTGGGGGAAAGCGTCGCGGGCAGGGGGTCATCACTGGCCTGGCAGCGAGGAAAACAGCTCTCCTAAAAGGCGTCAGTCCACTAAACCGGCCAGCACTGAATCGAATGCCTCGAAACAGACGGACACCCAGTCGACTTGGCAACGGCAGAGTAACTGTAAACCACTCAGCATTTCCTCAGAGAACAAGGCCGTTTGTTGCGCAGCGTGAATCTCAGCGCAGGCAGACGTACACACAGAGGTGGCCATACACACAGCGGGACACACAGAAAGCGCCGCCCCACATGACCCGCAGACCCTTCCAGCTCCACAGGAAATGGAATGGTCCTCCAGTTCATGAGTCACATAGAGAGGCACGCCAGGCCACCTTCCTGTCCAGAAGAGGCCTAAAGGTGGTCTTATCTGTTAGTGTCACACCGGGGCCACGGCCTGGATTCAAACAGGTCCAAACTCATGTGCAGAAAACAGCCCCatcaacacagagaacacaaagGACCCGGCCGTGGCGCACTCCTCAGAACAACACCGGCATTCTCACAGTGTCAATTGACAACCCCACTGCCAGAACTCAGCCTGAGCCGGCCCACTCGTGGTCTCTCCACCCCTCTACCCCAGCCCCTCCCCCTACCCCTGCAGAGGAGCCTGAGAGAAAACCACCTAAAGGAGTTGCTTTACAGTTTGACATCAACAGTGTGGGAAAACAGaccACGATGACACTGAACGAGCGATTCCGGATTCTGAAGGACAAACGCATCGCAGCATCGAAGCACAGCAGCAAAGGAGGACGATTCGTCACTGTTGGCTAACTACGAGCCCTACGGACCAATAAGAGAGACTTACTGAGGTCACATGTTTCTTTTGACCCAATCTCAGAGCAGTAAACTGACCCAAACCCCGcccagacagagagacagagcggcCACGTTAGCTCCAGCGCTCCGGACCGGCTAATGGAGCGCTGTTTATGAGCGATGTTGTGTTTAATTTCCTGGGCTGAAGAGATGCTTTGAAACCAGGAGGCCCTGACGCTCTGATTCAACAATGTTTTTGAGCCTTTTCATGTTTGTATTTGGCTGCAGTTCCTTCTTTTCTCAAAGCCAGTGTTCCTGTGTTTGGGTTATATTTTGTGTTCCCTGAGCAACTTTTACATCAGTTAGATCAGATGAtaaagtttagttttgttttttatgaagAGGGGAGCTGCTCGGGGTCGATGAAGAAGAGACGGGTGCTTTGTTGAAAAGAGAAttttggttgttgttttttttttcttgtccaacagaagtgttttaaacatttgttttataatgtttcaTTAAATAAATGGAATATTGTCTTTCCTGA

Function

NR:

description
PREDICTED: UAP56-interacting factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007229168.3 False 1676 mRNA 0.50 9 1804837 1809651
XM_022677777.1 True 1724 mRNA 0.50 10 1804837 1809648

Neighbor

gene id symbol gene type direction distance location
LOC103044322 pfn2,pfn2l,LOC107681776 coding downstream 34620 1762109 ~ 1770217 (-)
LOC111194260 NA coding downstream 47829 1748858 ~ 1757008 (-)
zbtb41 zbtb41,LOC102777630 coding downstream 87408 1709324 ~ 1717429 (-)
LOC103022462 NA coding downstream 99469 1702574 ~ 1705368 (-)
LOC103045138 NA coding downstream 104167 1695745 ~ 1700670 (-)
LOC103043415 LOC108430767 coding upstream 13575 1823226 ~ 1830971 (-)
LOC103041568 LOC108430764,LOC107671734,LOC107559383,LOC107711714 coding upstream 114029 1923680 ~ 1965329 (-)
LOC103041268 LOC108430762 coding upstream 159707 1969358 ~ 2070958 (-)
LOC103039403 LOC108430760 coding upstream 424926 2234577 ~ 2292404 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding upstream 492650 2302301 ~ 2312661 (-)
G138299 NA non-coding downstream 82659 1721650 ~ 1722178 (-)
G138290 NA non-coding downstream 112522 1638155 ~ 1692315 (-)
G138322 LOC103043726,LOC105899208 non-coding upstream 1387 1811038 ~ 1817138 (-)
G138323 NA non-coding upstream 17451 1827102 ~ 1836713 (-)
G138315 NA non-coding upstream 18745 1828396 ~ 1880995 (-)
G138325 vps4b non-coding upstream 35678 1845329 ~ 1846510 (-)
G138329 vps4b non-coding upstream 39206 1848857 ~ 1852968 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 703344 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1087514 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 668044 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1240749 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1285950 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1347099 3156750 ~ 3175353 (-)
G138708 NA other upstream 2023070 3832721 ~ 3833670 (-)

Expression


Co-expression Network