imp3 (imp3,LOC107671714)


Basic Information

Item Value
gene id imp3
gene name imp3,LOC107671714
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2488010 ~ 2491153 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250627.3
CGCTGTTTCAGAGCCGCTGTGTTTCTCCAGCAGGCGGCCATGTGTTTCTCCTCACTCACTGTAGTGTTTCTCAGACTCCGCTAAGATtagctctctctgtttctctgtagttTAGCGGATTTAATCGGTAAAATGGTCCGAAAGCTGAAGTTCCACGAGCAGAAGCTCCTGAGGAAAGTAGACTTTATTAACTGGGAGGTGGATAATAACCTGCACGAGGTGAAGATCCTGAGAAAATACCACATCGAGAAGAGAGAGGACTACACCAAgtacaACAAACTGAGTCGCAACATCAGAGAACTGGCCCAGAAAATCCGCGACTTGGATGAAAAGGACGGTTTCCGAGCTCAGAGCACCTCACAGTTCCTGGAGAAACTCTACTGTATCGGATTGATCCCCACCAAACAGAACCTGGCTCTTGCAGATGCTGTCAGTGCTTCCTGCTTTTgtagGAGACGGCTGCCAACAATTATGCTGAAGCTGCGCATGGCTCAGAACCTGAAAGCTGCCGTCACGTTCATCGAACAAGGACATATTCGTGTTGGGCCAGAGGTTGTCACAGACCCTGCTTTTCTTGTTACAAGGAACATGGAGGATTTTGTGACCTGGGTGGACTCCTCCAAGATCAAACAGCATGTCATGAATTACAATGAGGAGCGTGATGACTTTGATCTTGTGGTTTGAGGCCGAGGTTGGACAGAGGTTGTTGAACATGAGAGCCAAAGGAAACCTCAGAAGCCACTCTGGATCCGCAGTCAGCAGAGCAATGTGAAGTCAAGGCCGATACACCATGGACTGAATGAAGACTTTATTACTGAAAGGATTTCGCTTAAACATTGCAACCCCTGTGATTGCAAAGAGAGGCTATTAGCACATTGGTGATgtgttataaaaatatttgtatatttattatacactgcGAGGGACATTTTAGTACATTAAGAAttgcaaaaacatatttttttgtaacaaaaattgtacagtgtgtgaagaaaaagctttcattttatgttggatttttttgttttcctttaatGTTCTTGTAGCCAGGTATGgctgctaaaataataaatctggAAAGAAAA

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

NR:

description
U3 small nucleolar ribonucleoprotein protein IMP3

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250627.3 True 1085 mRNA 0.44 7 2488010 2491153

Neighbor

gene id symbol gene type direction distance location
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 23721 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 46543 2437569 ~ 2441467 (-)
LOC103043218 ap2m1,ap2m1a,LOC108430755,LOC107671693,LOC107593770 coding downstream 66486 2407274 ~ 2421524 (-)
LOC103042896 dvl3a,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding downstream 97194 2370824 ~ 2390816 (-)
LOC103039916 prdc1,prtfdc1,LOC108430708,LOC105891346,LOC106569196,LOC107671666 coding downstream 175349 2302301 ~ 2312661 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding upstream 23951 2515104 ~ 2520897 (-)
LOC103043419 LOC108430750 coding upstream 41105 2532258 ~ 2542943 (-)
tctex1d1 tctex1d1 coding upstream 73377 2564530 ~ 2567513 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 80253 2571406 ~ 2588323 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding upstream 118557 2609710 ~ 2672633 (-)
LOC103040233 NA non-coding downstream 93125 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 173860 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 181629 2233542 ~ 2306381 (-)
G138343 NA non-coding downstream 528286 1958703 ~ 1959724 (-)
G138342 NA non-coding downstream 558501 1929123 ~ 1929509 (-)
G138400 NA non-coding upstream 16679 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding upstream 31373 2522526 ~ 2529626 (-)
G138399 NA non-coding upstream 62999 2554152 ~ 2570647 (-)
G138408 NA non-coding upstream 83167 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 127854 2619007 ~ 2656437 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 1116 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1386517 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1770687 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 559247 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 604448 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 665597 3156750 ~ 3175353 (-)
G138708 NA other upstream 1341568 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1356569 3847722 ~ 3861356 (-)

Expression


Co-expression Network