tctex1d1 (tctex1d1)


Basic Information

Item Value
gene id tctex1d1
gene name tctex1d1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2564530 ~ 2567513 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250632.3
ACAGTTGCTAGGCAACGCAACGATACAACACAGACCGCTGGTAGTGTTTGTGTGCTGCAGTTCTcttaaactaaataattaaaattaggTGCTAAAATTAGTAAATTAGTCATTATAAAGTGAAATATTGTGGATTTTCTGTGCTGTATTGTAGTTTGAGGTGTGGAGCGAGTTTTACAGTGAATTCCTAAAAGGTTTAGTTCAGTGTAGAAGCTCATCCAGTGctgataattgttttttttttattaatttaatttttattttttagttagttAATCTAACTGTGAGGAACATGTCGGACCTGGCTAAAGAGAAAGTTGCTCGGCTGCTGAAGAAGAGAGGGAGTGTATCCTCTCTGGGGAGTCATGATGTCAGGAACAAGAACCTGCTGTTGAAAAAcaaggaTTCAATCAGTACCGTGTCCTATATGGACGACCCTGGTCACCATGACGATGTCTCACGACCCGCAGTGCAGATGGAGAACACCTATCAGCTTGGCCCTAAAAAGCGCTTTCCTGTGCAGACAGTGAAGGAGATTCTGAAGGACGTGCTGTCCAGCTACCTGCTAGAGGTGAAGTACGAGGCCGAGCTGTGCAGACAGATGACCAAAACCATATCAGAGGTGGTGAAAGCTCGCGTGAAAGACATGATGATCCCTCGCTACAAGATCATAGTGGTGATCAGCATCGGCCAGCTGACAGGACAGAACATGCACGTGGGGAGCCGCTGTCTGTGGGACGCAACCAGCGACACCTTTTGCTccaacagcttcaaaaacagcTCACTGTTCGCCATCGCTAACGTCTACGCCGTCTATTTCGAATGAGGGGGCATGAATGAGTGTTCTCTTTTATTCAGAGTATCAGTATGAACAGAACGTCTTTAAGGGGAGGGAACGTTTTAAATTGTCCATCTTCAATTGTCCCACAAGTTCTGTTTTATGTAGCAATAAAAATAGTTGTTATTTATGCCCAATCACAATCTCTTTTTATTATTGCCATAGAGTTTAGCTGCTTTTAGAACTGTGCCTTTAAGACTGTTAAGTTTGGACTTAACATAACTTTTGGATGTTTTAATCTGCAACAATTAACAATTTATTCCCAAATAAATTATGAGAAAT

Function

NR:

description
PREDICTED: tctex1 domain-containing protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250632.3 True 1120 mRNA 0.42 4 2564530 2567513

Neighbor

gene id symbol gene type direction distance location
LOC103043419 LOC108430750 coding downstream 21587 2532258 ~ 2542943 (-)
LOC103043115 fam78ba,LOC108430701,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC103396126,LOC101481240,LOC103357776 coding downstream 43633 2515104 ~ 2520897 (-)
imp3 imp3,LOC107671714 coding downstream 73377 2488010 ~ 2491153 (-)
LOC103043517 abi1b,LOC108430754,LOC107671751,LOC107559371,LOC107681778,LOC108267643,LOC101170217,LOC102308235,LOC103354342 coding downstream 100241 2447385 ~ 2464289 (-)
LOC107197650 NA coding downstream 123063 2437569 ~ 2441467 (-)
LOC103043822 LOC108430747,LOC108267185,LOC107719259,LOC107593781,LOC107681818,LOC107671695 coding upstream 3893 2571406 ~ 2588323 (-)
LOC103044624 LOC108430746,LOC107719260,LOC108267485,LOC107593782,LOC107681771,LOC107671696 coding upstream 42197 2609710 ~ 2672633 (-)
LOC103045751 leprot,LOC108430744 coding upstream 116147 2683660 ~ 2687643 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding upstream 149953 2717466 ~ 2731716 (-)
LOC103044426 LOC108430742 coding upstream 166953 2734466 ~ 2741725 (-)
G138400 NA non-coding downstream 32633 2507832 ~ 2531897 (-)
G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding downstream 34904 2522526 ~ 2529626 (-)
LOC103040233 NA non-coding downstream 169645 2392597 ~ 2394885 (-)
G138366 NA non-coding downstream 250380 2313934 ~ 2314150 (-)
G138358 NA non-coding downstream 258149 2233542 ~ 2306381 (-)
G138408 NA non-coding upstream 6807 2574320 ~ 2594954 (-)
G138416 NA non-coding upstream 51494 2619007 ~ 2656437 (-)
G138414 NA non-coding upstream 112531 2680044 ~ 2748727 (-)
G138415 NA non-coding upstream 141883 2709396 ~ 2745139 (-)
G138445 NA non-coding upstream 198694 2766207 ~ 2767115 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 77636 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1463037 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 1847207 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 482887 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 528088 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 589237 3156750 ~ 3175353 (-)
G138708 NA other upstream 1265208 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 1280209 3847722 ~ 3861356 (-)

Expression


Co-expression Network