scp2 (scp2,scp2a)


Basic Information

Item Value
gene id scp2
gene name scp2,scp2a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2982986 ~ 2996307 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250647.3
tgcgtGCCTGCCTGCAATCCACACTGAGAGCAGCGCTGTCAAACAAGGAGCTGGAAAAATGGGAccgcagaaaaacagagtttTTGTTGTTGGCGTGGGAATGACAAAGTTTGATAAGCCAGGAGCAAGAGATGGAGACTATCCCGATATGGCTAAAGAAGCAGGAGAGAAAGCCTTGAATGATGCTGGAATTCCATATTCTGCTGTGGAACAAGCCTGTGTGGGCTATGTTTATGGTGACTCCACTTGTGGACAGAGGGCTATTTACCACAGCCTGGGTCTGTCTGGCATCCCCATTATCAACGTCAATAACAACTGCTCCACTGGCTCCACAGCACTCTTCATGGCCCGGCAGCTGGTTAGGGGAGGATTGGCTGACTGTGTGCTTGCTTTGGGTTTTGAGAAGATGGAAAGAGGTTCCTTGTCCTCTAAGTACATGGACAGGACCAACCCTATGGACAAACACATGGAAGTCATGATCAATCGATACGGAATTGCAGCAGCTCCTGCAGCACCGCAGATGTTTGGCAACGCTGGGAGAGAACACATGGAGAAATATGGCACTAGACCTGAACATTTTGCCAAAATTGCCTGGAAGAACCACAAGCACTCTACCAACAACCCCTATTCCCAATTTCAGGATGAGTACAGCCTGGACCAGGTTGTCAACTCCCGCAAGGTGTTTGAGTTCCTCACACTTTTACAGTGCTGCCCTACATCTgatggagctggagcagcagtgcTGGCCAGTGAGGCGTTTGTGAGGAGGCATGGGCTTCAGGCTAAAGCTGTGGAGATCATCGCTCAGGAGATGACCACGGACCTCGCCAGCACCTTTGAGGAAAACAGCTGCATCAAGATGGTTGGCTACGATATGACACGGCTTGCAGCCAGGAAGTGTTTTGAAGCTGCAGGCCTGAAGCCCACTGACGTCAACGTCATCGAGCTGCACGACTGTTTCTCTGCCAACGAGCTCATCACATACGAGGCTCTCGGCCTCTGCTCTGAAGGTAAAGCTGGAGAGTTAATCGACCGGGGGGATAACACCTACGGAGGAAAGTGGGTGGTTAACCCCAGTGGAGGGCTCATCTCAAAGGGACACCCGCTCGGAGCTAcagGTCTCGCCCAGTGTGCAGAGCTGTGCTGGCAGTTAAGAGGGGAGGCCGGTAAAAGGCAGGTCCCGGGAGCGAAGGTCGCCCTGCAGCACAATATCGGCCTCGGTGGAGCTGTGGTGGTCACACTTTACAGGATGGGATTCCCTCAGGAAGCAAGcCCACGGATAGCTGCAGTGCCCACCAGTGCTGCCAGTGGTTTGGAGGGATTCAAAGCCCATATAGTTTTCAAGGAGATCGATAAGAGACTAAAGGAgGAGGGAGAGGCGTTCGTCAAGAAAATCGGTGGCATTTTTGCCTTTAAAGTGAAGGATGGGCCTGGCGGAAAAGAAGCACTGTGGGTCGTGGATGTGAAGAACGGTAAAGGCTCTGTGGACAATGACTCAGgGAAGAAAGCCGACTGCACCATCTCTATGGCAGATGCTGATCTACTTGAATTGATGACGGGGAAACTGAACCCGCAGACTGCCTTCTTCCAAGGAAAGCTAAAGATCACTGGGAATATGGGGATGGCCATGAAGCTGCAGAACCTTCAGCTCACTCCAGGAAAGGCCAAACTCTAAAGCAGCACCTCTCAGTTTGAAGACAGAAGACCTGAAGTTTGAATGCAAGACCACGTCCATCTAACTCCCATCAGCGGTGACATTCCCAAACATGGCAACAAGATGGAATAACTTTCTGCACTTAATCGTCGATCATTTGTTGACTCCTGTGAAATTacagtacatataaaaaaacgTTATTCATTTTAAAGCGTTACACACTTAATACAAATGTACCATATTATAATGGTAAACAGCAGATGGTATATGACGACACAAAAGATAATAGGAAATGAGCTTTTAGTATACATTATGGCATGCAAATAACATATAATACATGTATAGGAGTTCTGTTATGTTAAAAGCACAGAAAGGATTGTTTTTTCTCTAAATGCATATTCTGTGGATTACCACTAGAATTATGTGAAGTTGCTGTAGGGTGGtcttacatttctttttaaggGTTATTACTAACTGCACTTGCATTATGCCACATAATGTGCCTCTGTCAGAGAGAGtaatcattagcattagcattatctctAGAATTTATGTAATTCAAAGTTAATGAGTTATCTGCAATAAGAGCCAGTGTGTGGGATAAGAattcagatttcagatttcaaaaatcttttttcttcttctaaaaaaaaaatcactactgTAAGTTCAGTTTCTAACACATTAGCTTGAGTATGGGATCAGTTTCATTGTTAAATATGTCTCAGTAAGGATGTTTGATGAAGCATTTTGTCTAATTGTGGTTTTGATATAtgtgttaaaaatgatgagatgcGATttctaatacaaatatataaatatatatatttcctatgAACTAAAAAGATTTGTCCACATGATGTTTGTTTAAAAGGCTTTaaaactttctaaaaaaaaacaagctgtaTCACTACCTACTAAAAGAAATCTGCGTCGGACTGCAGTAAACAGTGCCTTATGTTGTTGATGTTTGGAGAATTTGCCTAAATTGtagcttaaaatctaaaaaagcgAAGTTTCCCTTTTGAAAATA

Function

symbol description
scp2a Predicted to enable lipid binding activity; propanoyl-CoA C-acyltransferase activity; and propionyl-CoA C2-trimethyltridecanoyltransferase activity. Predicted to be involved in positive regulation of intracellular cholesterol transport. Predicted to act upstream of or within lipid transport. Predicted to be located in mitochondrion and peroxisome. Is expressed in intestinal bulb; lens; liver; and solid lens vesicle. Orthologous to human SCP2 (sterol carrier protein 2).
scp2 Enables several functions, including cholesterol binding activity; lipid transfer activity; and long-chain fatty acyl-CoA binding activity. Involved in several processes, including inositol trisphosphate biosynthetic process; lipid transport; and progesterone biosynthetic process. Located in nucleoplasm and peroxisome. Part of protein-containing complex. Biomarker of Zellweger syndrome.

NR:

description
PREDICTED: non-specific lipid-transfer protein

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0032934 sterol binding molecular_function

KEGG:

id description
K08764 SCP2, SCPX; sterol carrier protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250647.3 True 2687 mRNA 0.45 16 2982986 2996307

Neighbor

gene id symbol gene type direction distance location
fam159a fam159a,LOC106598084 coding downstream 46454 2931763 ~ 2936532 (-)
LOC103047584 NA coding downstream 55365 2923160 ~ 2927621 (-)
LOC103046677 lrp8,LOC107671705,LOC107719273,LOC107681710,LOC107559340 coding downstream 101123 2767191 ~ 2881863 (-)
LOC103044426 LOC108430742 coding downstream 241261 2734466 ~ 2741725 (-)
LOC103046368 LOC107719261,LOC107593886,LOC107671769,LOC108267486,LOC107559363,LOC106568718 coding downstream 251270 2717466 ~ 2731716 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding upstream 247 2996554 ~ 3000039 (-)
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding upstream 3814 3000121 ~ 3006666 (-)
LOC103023383 LOC108430736,LOC108267617 coding upstream 28935 3025242 ~ 3029094 (-)
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding upstream 33425 3029732 ~ 3034068 (-)
LOC103045647 NA coding upstream 74843 3071150 ~ 3082049 (-)
G138446 NA non-coding downstream 127168 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 133784 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 193877 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 215871 2766207 ~ 2767115 (-)
G138414 NA non-coding downstream 234259 2680044 ~ 2748727 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 25808 3022115 ~ 3023372 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 154614 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 198286 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 544664 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 588877 3585184 ~ 3598597 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 496092 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1881493 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2265663 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 54093 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 99294 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 160443 3156750 ~ 3175353 (-)
G138708 NA other upstream 836414 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 851415 3847722 ~ 3861356 (-)

Expression


Co-expression Network