LOC103022773 (uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616)


Basic Information

Item Value
gene id LOC103022773
gene name uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3000121 ~ 3006666 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250649.3
GTAGGGCACAAGCCCGGGTACTTTGGAATGGGACCCTCCACCGTGGCGAGTGTGGGTTTATCCGCTGGCTCGGCGCGCTCACTGCAAGCATGGCTGGCGATAGCGAGATACGACTGAACGGACAGGCGGAAAACGGCAACACCGTTAGGCAGCCTTTTCTCATCGGTGTATCGGGGGGAACCGCCAGCGGCAAGTCTTCAGTATGTGAGAAGATTATGGAGCTCCTGGGCCAGAATAAGATTGACCATCACCAGCGGCAGGTGGCAACCCTCAGCCAAGACAGCTTCTACAGGGAGCTCACCCCGGAACAGAAGGCTAAAGCTCTTAAAGGCCAGTTCAACTTTGATCACCCAGATGCTTTTGACAATGAGCTCATCCTGAAGACTCTTCGTGACATCATACAGGGGAAGACCGTTCATATTCCAGTTTATGACTTCGTCACACATTCCAGAAAAGACGAGTTTGTGACTCTGTACCCCGCAGACGTGGTTCTGTTTGAGGGCATCCTCATGTTCTACATGCAGGAGATCCGAGACCTTTTCCAGATGAAGCTGTTTGTGGATACAGACCCAGACACTCGTCTCTCCCGCAGAGttcTGCGGGACATCAGTGAAAGAGGCCGAGAGCTGGAGCAGGTTTTATCTCAGTACATCACTTTTGTGAAGCCAGCATTTGAAGAATTCTGTCTTCCAacaaaGAAGTATGCTGATGTCATCATCCCACGAGGAGCGGACAATCTAGTGGCAATAAACCTAATTGTGCAGCACATTCAGGACATTCTCAACGGGGGATTCAGCAAACGTCAGAACGGCTACGTGAACGGACACGGGACGCCCCGACAGAGGAGGACATCTGAGTCCAGTCGGCCACACTGACCTCACTTGTGGCCCTCGCTCCTTCTGTGGAGGATGGGCCCGGACTGTAATGAAATTCAGCATCCCTTCGTTGAATGGAAGAGCTGCTTGAGTTGAAAGGCCTTTATGGTTGATATGACTTGCGTTTTAAGTATGTTGTCATTATTACTATGGTGATTTTattgttggtttttttttttgtggtttgcatttaccagtttttatttttctggatGAAGACTAAAAGCGCTTTCTGTTTTTTGGAAAGTTGTATGACATGCTCGACTGGTGTGCTTTGGTcaacattagtaaaaaaaaataataaacgaGTAGTCTGAATGGTCTAACGTCCTGccagtggttgctgtggttggGACGGTGGTGTTACAGGTATAAAACTTGAAGTCAAAACTCAGGAAAAAGTGCTTGGGTCTTTGTAGAGGTGTGTTGGTATCCTCCTGCAGACGTATAAAAATCCTgcacttttacattttctctCCATTTTAGGTGCTATGTATATGGCAGTACTTGTGCTATCCTTGTGGTcacattttattacttttagtaCTCTGTAGATTAATTCTTTCATAtgtttacacacatttcttGATTTAGACCACTTTCCATGTGTATCACAATGTATGATGCCTCAATCTTGCCTTCTATGCCAATTAAGCTGTCTTAGGTTTCAAGGCTGAATTCCTACACCAGTATTTTTATACACCATATGTCTGATCATAATTCAGCTTTATCTTGGATGAGAAGCTTTATGGTGTTATAATAACAAAGCGGGTGCAATCATAAGCTTATACAGCCTGCAACTGTAAATGACTTGACAACACTAAGATTAACAGTTGAGGGGGATTGTTTCCACTCATTTTAACACCCAAATCAACAGTTGCTTGAAATCATGTAGATATTTTCTCATAACCTTGGAAAAACAAGATTAATGTCAGGGaatcaatattaaaataataatattttatcatatatttagCCATCTAGCATTGATTTGCTAGTCTGGCCGTCTTGCTTACATCTGAATACTTgaatttttatcctttttttttgttagatgTCAGTTTCTGGCCATAAAATGTGTGATATTTCTcagtgattaaaataataaaaaatacatggaatgaaaaataaaaataatcagtttttctATCAA

Function

symbol description
uck2b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).

NR:

description
PREDICTED: uridine-cytidine kinase 2-B

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250649.3 True 2028 mRNA 0.43 7 3000121 3006666

Neighbor

gene id symbol gene type direction distance location
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 82 2996554 ~ 3000039 (-)
scp2 scp2,scp2a coding downstream 3814 2982986 ~ 2996307 (-)
fam159a fam159a,LOC106598084 coding downstream 63589 2931763 ~ 2936532 (-)
LOC103047584 NA coding downstream 72500 2923160 ~ 2927621 (-)
LOC103046677 lrp8,LOC107671705,LOC107719273,LOC107681710,LOC107559340 coding downstream 118258 2767191 ~ 2881863 (-)
LOC103023383 LOC108430736,LOC108267617 coding upstream 18576 3025242 ~ 3029094 (-)
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding upstream 23066 3029732 ~ 3034068 (-)
LOC103045647 NA coding upstream 64484 3071150 ~ 3082049 (-)
LOC111194268 LOC108430728 coding upstream 78076 3084742 ~ 3086475 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding upstream 82725 3089391 ~ 3099890 (-)
G138446 NA non-coding downstream 144303 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 150919 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 211012 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 233006 2766207 ~ 2767115 (-)
G138414 NA non-coding downstream 251394 2680044 ~ 2748727 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding upstream 15449 3022115 ~ 3023372 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 144255 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 187927 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 534305 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 578518 3585184 ~ 3598597 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 513227 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1898628 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2282798 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 43734 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 88935 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 150084 3156750 ~ 3175353 (-)
G138708 NA other upstream 826055 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 841056 3847722 ~ 3861356 (-)

Expression


Co-expression Network