LOC103023383 (LOC108430736,LOC108267617)


Basic Information

Item Value
gene id LOC103023383
gene name LOC108430736,LOC108267617
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3025242 ~ 3029094 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250651.3
GTAGCTAAATTAGTTAACTTGTTAGCACGCTAAGCTAGCATAGctatttagttagttagctaactagctcatttaaagttttatcttaaaaaaatacctAAAACTCAGAATGCACACAGAGCACACAGTTACACGACAGCAAAAACGAAGGAAATCAAAGCAGGAATCTGCTGAGTGGGACAGCTTATTCCAACAAGAACTGAGAACACAGGAGCAGTCTTTGGTCTTTGTGAAACGAATGCTGGTGCTTGCAGTGTCCTCTATAACCTATCTACGAGGAATATTTCCAGAAGATGCATATCGATCTCGCTACTTAGAAGACTTATGCATCAAAGTTATAAGAGAGGACTGTTCATCTCCAGCAGCTTGCAGAACTGTTAAGTGgatGATGGGGTGCTTTGATGCTCTGGAGAAGGAATATTTGCAGATTGTGCTTATTGGGGTGCACAGAGACCCAGATGACACCAACCATGTCATAGAGTCTTACCAGTTTAAGTTCAAGTACTCAGAGCACGGGCCACAAATGGACATCCTCAGAAACAACAGCATGGAGATGTCTGTGACCATGGAGGACACAAAGAAAGCCTCGGTTCTCCTAATCAGGAAACTGTTCCTCCTCATGCAGAATTTAGATGCTCTTCCTGATGAGGTCTACCTCACTATGAAGCTCTACTACTACGATGATGTCACTCCACCAGACTATGAACCTCCAGGCTTTAAGGAGGGTGTGTGCGACAGTCTGTGGTTTGAGGGGACAGCAGTGCACTTCAGAGTGGGCGATCTGCACACACCCTTTCATGTCCTGAAGGTCGGAGTGGCCGCTGAACAAGGCAGAGTGAGCAAACTGCAGGAAGGCAATCACCTGAGAGAGTGTGTTCAAGATTCAGCACAGCAAAGCGTCTGTAGGCTATCACTGGCACAGGAGGTGTCTGAGCCCTGCCGGGAGGACTTGCTGTCGGAGGATGAATCGGCTGCACAGTTCAAGCCACCCACAAAAGCTCTGGCTAAGAGAAGAGGCAAAAACCCAgcaaagagaaggaggaggcaTATTTAAAACCACAACTGTTTTGAggcattttgtatttatttgtttgtgttttaattattgAGCATTGTTCATAATATTATACATTAGTTCCACATtcaatttaaatatgtaaattaatgaGTTATTGTCATTTACTCTATTTATTATATGTCCAAATTTGTTTATGAAGTCTACCACCCTTCATGACTAATGTTATCTAAGGTCTTCAATCTGTTTCAAGTTATTTTTCCAGGTAATctatatatgattatatataatTCATTTCCTAAATAAAACTGTACATTAATGACTTAAA

Function

NR:

description
PREDICTED: HORMA domain-containing protein 1-like

GO: NA

KEGG:

id description
K12778 HORMAD, HOP1; meiosis-specific protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250651.3 True 1343 mRNA 0.41 12 3025242 3029094

Neighbor

gene id symbol gene type direction distance location
LOC103022773 uck2b,LOC108430692,LOC107593786,LOC103363741,LOC108267616 coding downstream 18576 3000121 ~ 3006666 (-)
c16h1orf123 si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 25203 2996554 ~ 3000039 (-)
scp2 scp2,scp2a coding downstream 28935 2982986 ~ 2996307 (-)
fam159a fam159a,LOC106598084 coding downstream 88710 2931763 ~ 2936532 (-)
LOC103047584 NA coding downstream 97621 2923160 ~ 2927621 (-)
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding upstream 638 3029732 ~ 3034068 (-)
LOC103045647 NA coding upstream 42056 3071150 ~ 3082049 (-)
LOC111194268 LOC108430728 coding upstream 55648 3084742 ~ 3086475 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding upstream 60297 3089391 ~ 3099890 (-)
LOC107197653 NA coding upstream 90885 3119979 ~ 3150877 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 1870 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 169424 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 176040 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 236133 2788375 ~ 2789109 (-)
G138445 NA non-coding downstream 258127 2766207 ~ 2767115 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding upstream 121827 3150921 ~ 3156055 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 165499 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 511877 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 556090 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 570169 3599263 ~ 3599510 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 538348 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 1923749 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 2307919 695903 ~ 717323 (-)
LOC103045355 LOC108430731 other upstream 21306 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 66507 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 127656 3156750 ~ 3175353 (-)
G138708 NA other upstream 803627 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 818628 3847722 ~ 3861356 (-)

Expression


Co-expression Network