dnajb4 (dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472)


Basic Information

Item Value
gene id dnajb4
gene name dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3177666 ~ 3184535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250664.3
GGTTTAGGGTTCATAACCAGCCATTGGGGTCCCCAGGCCAGCTCAGGGCCCTATAAGGCGACTGTTTAGTTTGCTTGCCCTGTTGCAACGGGCCTGTTCTTTAGGTTTGGTCATCAAATAAACAGCTGAAAGACCaaattaaatggttttaaaatggaCATAAGACACTATTAGGCCGATACTTTCTTCGTGCCACGTTCttgtaacaaaacaaatccTAAAAATAACCTAAATATGAGTTTCCTGGCTTGATTTATTGGTACATTTATCTTCACTAATTTGAGAGTGTGGACGTAGGGGATGACGTGCCGCTCGGCGTTAGCTTTTCTAGAAAGAGCCCACGGTTTCTAGGGGTGCAGTATTGGACCGAGGGAGGGCGGAATGGCTATTTAAAGAGGGAACCAAGGAGAGAGGCAGAAAAACAGAGTAAAACACGAGCCAGAGCGTCGAGTAACCGCCTCCATATAGCCGGACGAGCTGCCTTCGTCGTGCCATCACTCATCTATCTCCACTTATCCACCATCTCCACCTCTTCCAGCGGATAACTGACACGTTCATATGCTGGTTATTTCCTATTTTTCCAAAGGATAACCGTCTCAGTCTGCCTCAGTCTTCTCTCAGGAGGCTGAAAACATGGGAAAAGACTATTACAAAATACTGGGGATCTCGAAAGGAGCCGCAGAAGAGGACATTAAAAAGGCGTACAGAAAACAGGCTCTGAAATGGCACCCCGATAAAAACAAGGCGCCCAACGCCAGCGAGAAATTTAAGGAGATAGCCGAGGCTTACGAGGTGCTGAGCGACCCGAAAAAACGAGAGATATACGACCAACACGGAGAGGAAGGTCTTAAAGGTGGTGGCGGCCCCACTGATGGACAAGGCAGCAACTTCACCTACACCTTTCATGGAGACCCCCACGCAACTTTCGCCACCTTCTTCGGCGGCGCCAACCCGTTCGAGATGTTCTTCGGCAGGAAGGTGAACGGCAGGGACGACGACGACATGGAAGTGGACGGCAGCGACCCGTTCGGCTCCTTCACCAGCTTTAACATCAACGGCTTCCCCCGTGGCGAGCGGCCCGTGGGCTTGGGTGGGCAGCCGCGGAGCAGGAAGCAGGACCCTGCCATTCACCATGAGCTGAGAGTGTCCCTGGAGGAGGTCTTTCACGGCTGCACCAAGCGAATGAAGATCTCACGCAAGCGGCTGAACCCAGATGGACGCACCATGAGGACAGAGGACAAGATCTTGACCATCGAGATTAAGCGTGGCTGGAAGGAAGGCACAAAGATCACATTCCCCCGAGAGGGTGATGAAGCACCCAACACCATCCCAGCTGACATAGTGTTCGTCATCAAGGACAAGCCTCACGCCCACTTCAGGAGAGAGGGGTCGGATATTGTCTACCCAGTGCGCGTCAGTCTGCGGCAGtcGTTGTGTGGCTGCTCCGTTACTGTGTCAACGATAGATGGGAAAACGTGCAACATAAAGATAACTGACGTCATCAAACCTGGCATGAGGAAGACAATCGCTGGACAGGGTTTGCCCTTCCCTAAAAACCCAGATCAAAGAGGAGACCTCATAGTGGAGTTTGATGTGAATTTTCCAGACACTCTGCCGACTAACGCCAAGGACGTCCTGAAACGGCACTTGCCCACttcgtaaaatcaaagaaagggACCGGACTGAAATGACATTCAAGTCCCGAAAactgttgttattttttttccccacctgTCCTTGAACTTTATTGACAAATCACTGCTACACCCCATACAGAATGTGcaatctctatttttttttatctatttaggGTTTAGTATTGTCTGTTTTCTGTTGCATGCTGAAACAAGGTCATAAAAGTGCTACAAGTGCTAACTCCATGTATCAGAAGTAAATGTGGAAATTTGACTTGTTTCCCACAATGGTTTTATTTACTCAATCTCTTCTCGAATCATTTTGACAGGAACTTTTGGAGAAGGAAAGAACTGAAAGACTCTTGACTACATTTTTGAGTGTGGTCAAAAAATACATTCGtacatttgtatgtgttttacagagcaaacacatttgtgtgtgtttctacacATGGCAACACTTTCTTCTGAAAGGAGCTGCCTGAAGAGTGTTTATACAGTGAATGGAATTACAGCTTCGTTTaaactgtgaaaaa

Function

symbol description
dnajb4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4).

NR:

description
PREDICTED: dnaJ homolog subfamily B member 4

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09510 DNAJB4; DnaJ homolog subfamily B member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250664.3 True 2170 mRNA 0.48 3 3177666 3184535

Neighbor

gene id symbol gene type direction distance location
LOC107197653 NA coding downstream 26789 3119979 ~ 3150877 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding downstream 77776 3089391 ~ 3099890 (-)
LOC111194268 LOC108430728 coding downstream 91191 3084742 ~ 3086475 (-)
LOC103045647 NA coding downstream 95617 3071150 ~ 3082049 (-)
LOC103023705 LOC103023705,LOC108430734,LOC105891340,LOC108267618,LOC107577377,LOC107560788 coding downstream 143598 3029732 ~ 3034068 (-)
pigk pigk,LOC107751867,LOC107599845 coding upstream 197040 3381575 ~ 3416309 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding upstream 295433 3479968 ~ 3503822 (-)
usp33 usp33,LOC107708728,LOC107751869 coding upstream 320041 3504576 ~ 3535405 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding upstream 538202 3722737 ~ 3759982 (-)
LOC103031615 NA coding upstream 608793 3793328 ~ 3796794 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding downstream 21611 3150921 ~ 3156055 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 154294 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 321848 2768999 ~ 2855818 (-)
G138452 NA non-coding downstream 328464 2847558 ~ 2849202 (-)
G138450 NA non-coding downstream 388557 2788375 ~ 2789109 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding upstream 10058 3194593 ~ 3200110 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 356436 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 400649 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 414728 3599263 ~ 3599510 (-)
G138659 NA non-coding upstream 431258 3615793 ~ 3616014 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 2313 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 62980 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 114907 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 690772 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2076173 1050532 ~ 1101493 (-)
G138708 NA other upstream 648186 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 663187 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 1146336 4330871 ~ 4338197 (-)
G139074 NA other upstream 2091571 5276106 ~ 5276468 (-)
G139105 NA other upstream 2145543 5330078 ~ 5330805 (-)

Expression


Co-expression Network